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Job DescriptionASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain]
Confidence98.65%DateMon Jun 7 16:50:03 BST 2021
Rank46Aligned Residues156
% Identity14%Templated1wn7a1
SCOP infoRibonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease
Resolution2.75

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10... ......20.........30.........40.........50.........60
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Query Sequence  QLIVVDLETT. . . GLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGY
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Template Sequence  KMLAFDIETLYEEGEEFAEGPILMISYADEEGARVITWKNVDLPY. . . . . . . . . . . . . . .
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   136...140.........150.........160.........170.........180
 
   61........70.........80.........90...... ...100.........110.........
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Query Sequence  YERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNP. AFDSTIVARQRVTYSMPFSPLTV
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Template Sequence  . . . . . VDVVSTEREMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKKRCEKLGINFALGRD
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   181........190.........200.........210.........220.........230.....
 
   120........ .130.........140.........150.........160....
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Query Sequence  GRVWHHRLA. . . . . . . . . . . DLAAYAAGKLNIDPTELEGLDAVAERLGVPVVNRHS. . . .
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Template Sequence  GSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGQPKEKVYAEEI
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   236...240.........250.........260.........270.........280.........290.....
 
   165....170.........
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Query Sequence  . . . . . . . . . . . . . . . . AIGDAAATAFCFDML
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Template Sequence  TTAWETGENLERVARYSMEDAKVTYELGKEF
Template Known Secondary structure  TTS

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   296...300.........310.........320......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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