1 d2qxfa1
100.0
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
2 c4rg8A_
100.0
18
PDB header: hydrolaseChain: A: PDB Molecule: exonuclease i;PDBTitle: structural and biochemical studies of a moderately thermophilic2 exonuclease i from methylocaldum szegediense
3 c5fkvD_
100.0
20
PDB header: transferaseChain: D: PDB Molecule: dna polymerase iii epsilon;PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
4 c2p1jB_
100.0
23
PDB header: transferaseChain: B: PDB Molecule: dna polymerase iii polc-type;PDBTitle: crystal structure of a polc-type dna polymerase iii exonuclease domain2 from thermotoga maritima
5 d2guia1
100.0
19
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
6 d2f96a1
100.0
21
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
7 c3u6fA_
100.0
20
PDB header: hydrolase/dnaChain: A: PDB Molecule: three prime repair exonuclease 1;PDBTitle: mouse trex1 d200n mutant
8 c3cm6A_
100.0
11
PDB header: hydrolase, apoptosisChain: A: PDB Molecule: cell death-related nuclease 4;PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
9 d1y97a1
100.0
20
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
10 c1zbuB_
100.0
13
PDB header: hydrolaseChain: B: PDB Molecule: 3'-5' exonuclease eri1;PDBTitle: crystal structure of full-length 3'-exonuclease
11 d3b6oa1
100.0
19
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
12 d1w0ha_
100.0
13
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
13 c1zbhA_
100.0
13
PDB header: hydrolase/rnaChain: A: PDB Molecule: 3'-5' exonuclease eri1;PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
14 c2xriA_
100.0
15
PDB header: hydrolaseChain: A: PDB Molecule: eri1 exoribonuclease 3;PDBTitle: crystal structure of human eri1 exoribonuclease 3
15 c6n6jB_
100.0
18
PDB header: rna binding protein/rnaChain: B: PDB Molecule: rna exonuclease 2 homolog,small fragment nuclease;PDBTitle: human rexo2 bound to paa
16 c6rk6B_
100.0
17
PDB header: hydrolaseChain: B: PDB Molecule: oligoribonuclease;PDBTitle: characterization of an intertidal zone metagenome oligoribonuclease2 and the role of the intermolecular disulfide bond for homodimer3 formation and nuclease activity.
17 d1j9aa_
100.0
20
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
18 c3tr8A_
100.0
16
PDB header: hydrolaseChain: A: PDB Molecule: oligoribonuclease;PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii
19 c6n6dA_
100.0
16
PDB header: rna binding protein/rnaChain: A: PDB Molecule: oligoribonuclease;PDBTitle: vibrio cholerae oligoribonuclease bound to pag
20 c6a4dA_
100.0
18
PDB header: hydrolaseChain: A: PDB Molecule: oligoribonuclease;PDBTitle: pnp-tmp bound oligoribonuclease (orn) from colwellia psychrerythraea2 strain 34h
21 c5cy4C_
not modelled
100.0
19
PDB header: oxidoreductaseChain: C: PDB Molecule: oligoribonuclease;PDBTitle: crystal structure of an oligoribonuclease from acinetobacter baumannii
22 c2gbzA_
not modelled
100.0
20
PDB header: hydrolaseChain: A: PDB Molecule: oligoribonuclease;PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
23 c5z9xA_
not modelled
100.0
16
PDB header: plant protein/rnaChain: A: PDB Molecule: small rna degrading nuclease 1;PDBTitle: arabidopsis small rna degrading nuclease 1 in complex with an rna2 substrate
24 d2igia1
not modelled
100.0
17
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
25 d1wlja_
not modelled
99.9
20
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
26 c4fzxC_
not modelled
99.9
19
PDB header: hydrolase/dnaChain: C: PDB Molecule: exodeoxyribonuclease 10;PDBTitle: exonuclease x in complex with 3' overhanging duplex dna
27 c5l80B_
not modelled
99.9
12
PDB header: rna binding proteinChain: B: PDB Molecule: maternal protein exuperantia,maternal protein exuperantia;PDBTitle: structure of exuperantia exo-like and sam-like domains
28 c4wbqA_
not modelled
99.9
20
PDB header: rna binding proteinChain: A: PDB Molecule: qde-2-interacting protein;PDBTitle: crystal structure of the exonuclease domain of qip (qde-2 interacting2 protein) solved by native-sad phasing.
29 c2is3B_
not modelled
99.9
19
PDB header: hydrolaseChain: B: PDB Molecule: ribonuclease t;PDBTitle: crystal structure of escherichia coli rnase t
30 d1uoca_
not modelled
99.8
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: CAF1-like ribonuclease
31 d2d5ra1
not modelled
99.7
19
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: CAF1-like ribonuclease
32 c2p51A_
not modelled
99.6
16
PDB header: hydrolase, gene regulationChain: A: PDB Molecule: spcc18.06c protein;PDBTitle: crystal structure of the s. pombe pop2p deadenylation subunit
33 c4czwA_
not modelled
99.6
14
PDB header: gene regulationChain: A: PDB Molecule: pab-dependent poly(a)-specific ribonuclease subunit pan2;PDBTitle: structure of the neurospora crassa pan2 catalytic unit (protease and2 nuclease domain)
34 c4gmjB_
not modelled
99.6
19
PDB header: rna binding proteinChain: B: PDB Molecule: ccr4-not transcription complex subunit 7;PDBTitle: structure of human not1 mif4g domain co-crystallized with caf1
35 c4hecB_
not modelled
99.5
18
PDB header: unknown functionChain: B: PDB Molecule: putative uncharacterized protein;PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
36 c4q8jA_
not modelled
99.4
14
PDB header: hydrolaseChain: A: PDB Molecule: pab-dependent poly(a)-specific ribonuclease subunit pan2;PDBTitle: structure of the saccharomyces cerevisiae pan2-pan3 core complex
37 c3d45B_
not modelled
99.4
17
PDB header: hydrolaseChain: B: PDB Molecule: poly(a)-specific ribonuclease parn;PDBTitle: crystal structure of mouse parn in complex with m7gpppg
38 c2a1sC_
not modelled
99.2
19
PDB header: hydrolaseChain: C: PDB Molecule: poly(a)-specific ribonuclease parn;PDBTitle: crystal structure of native parn nuclease domain
39 d1kfsa1
not modelled
99.2
20
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
40 d1x9ma1
not modelled
99.1
20
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
41 c2kzzA_
not modelled
99.0
18
PDB header: transferase/dnaChain: A: PDB Molecule: protein (dna polymerase i);PDBTitle: klenow fragment with normal substrate and zinc only
42 c5okiA_
not modelled
98.8
19
PDB header: replicationChain: A: PDB Molecule: dna polymerase epsilon catalytic subunit a;PDBTitle: crystal structure of the ctf18-1-8 module from ctf18-rfc in complex2 with a 63 kda fragment of dna polymerase epsilon
43 c5dkuB_
not modelled
98.7
14
PDB header: transferaseChain: B: PDB Molecule: prex dna polymerase;PDBTitle: c-terminal his tagged appol exonuclease mutant
44 c6s1cE_
not modelled
98.7
19
PDB header: replicationChain: E: PDB Molecule: dna polymerase epsilon catalytic subunit a;PDBTitle: p3221 crystal form of the ctf18-1-8/pol2(1-528) complex
45 c6r5kA_
not modelled
98.6
17
PDB header: rna binding proteinChain: A: PDB Molecule: pan2-pan3 deadenylation complex catalytic subunit pan2;PDBTitle: cryo-em structure of a poly(a) rnp bound to the pan2-pan3 deadenylase
46 d1wn7a1
not modelled
98.6
14
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
47 c1tk0A_
not modelled
98.6
21
PDB header: transferase/electron transport/dnaChain: A: PDB Molecule: dna polymerase;PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and ddctp at2 the insertion site
48 d1qhta1
not modelled
98.6
15
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
49 c4m8oA_
not modelled
98.6
18
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase epsilon catalytic subunit a;PDBTitle: ternary complex of dna polymerase epsilon with an incoming datp
50 d1tgoa1
not modelled
98.6
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
51 c6wjvA_
not modelled
98.6
21
PDB header: cell cycleChain: A: PDB Molecule: dna polymerase epsilon catalytic subunit a;PDBTitle: structure of the saccharomyces cerevisiae polymerase epsilon2 holoenzyme
52 c1njzA_
not modelled
98.5
14
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase i;PDBTitle: cytosine-thymine mismatch at the polymerase active site
53 c2gv9A_
not modelled
98.5
14
PDB header: transferaseChain: A: PDB Molecule: dna polymerase;PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
54 d1d5aa1
not modelled
98.5
14
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
55 c6fwkB_
not modelled
98.5
21
PDB header: dna binding proteinChain: B: PDB Molecule: dna polymerase epsilon catalytic subunit a;PDBTitle: the crystal structure of pol2core-m644g in complex with dna and an2 incoming nucleotide
56 c5mdnB_
not modelled
98.4
19
PDB header: transferaseChain: B: PDB Molecule: dna polymerase;PDBTitle: structure of the family b dna polymerase from the hyperthermophilic2 archaeon pyrobaculum calidifontis
57 c3iayA_
not modelled
98.4
13
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase delta catalytic subunit;PDBTitle: ternary complex of dna polymerase delta
58 c2gv9B_
not modelled
98.4
13
PDB header: transferaseChain: B: PDB Molecule: dna polymerase;PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
59 c4x0pB_
not modelled
98.4
14
PDB header: transferase/dnaChain: B: PDB Molecule: dna polymerase theta;PDBTitle: ternary complex of human dna polymerase theta c-terminal domain2 binding ddatp opposite a tetrahydrofuran ap site analog
60 c5zo4B_
not modelled
98.4
24
PDB header: hydrolaseChain: B: PDB Molecule: putative 3'-5' exonuclease family protein;PDBTitle: inactive state of the nuclease
61 c6s2fA_
not modelled
98.3
17
PDB header: replicationChain: A: PDB Molecule: dna polymerase epsilon catalytic subunit a;PDBTitle: cryo-em structure of ctf18-1-8 in complex with the catalytic domain of2 dna polymerase epsilon (class 2)
62 d2hhva1
not modelled
98.3
13
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
63 d1ih7a1
not modelled
98.2
12
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
64 c2vwkA_
not modelled
98.1
15
PDB header: dna replicationChain: A: PDB Molecule: dna polymerase;PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
65 c6vddD_
not modelled
98.1
18
PDB header: transferase/dnaChain: D: PDB Molecule: dna polymerase i;PDBTitle: pol domain of pol1 from m. smegmatis complex with dna primer-template2 and dntp
66 c6p1hA_
not modelled
98.1
13
PDB header: dna binding protein/dnaChain: A: PDB Molecule: dna polymerase delta catalytic subunit;PDBTitle: cryo-em structure of dna polymerase delta holoenzyme
67 c6tnyA_
not modelled
98.1
17
PDB header: replicationChain: A: PDB Molecule: dna polymerase delta catalytic subunit;PDBTitle: processive human polymerase delta holoenzyme
68 d1s5ja1
not modelled
98.0
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
69 d1q8ia1
not modelled
97.9
18
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
70 c1d5aA_
not modelled
97.9
15
PDB header: transferaseChain: A: PDB Molecule: protein (dna polymerase);PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
71 c7jw2B_
not modelled
97.9
14
PDB header: rna binding proteinChain: B: PDB Molecule: exonuclease mut-7 homolog;PDBTitle: crystal structure of aedes aegypti nibbler exo domain
72 c5c0xK_
not modelled
97.8
17
PDB header: hydrolase/rnaChain: K: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle: structure of a 12-subunit nuclear exosome complex bound to structured2 rna
73 c5exrG_
not modelled
97.8
13
PDB header: replicationChain: G: PDB Molecule: dna polymerase alpha catalytic subunit;PDBTitle: crystal structure of human primosome
74 c5n2hA_
not modelled
97.8
11
PDB header: transferaseChain: A: PDB Molecule: dna polymerase;PDBTitle: structure of the e9 dna polymerase exonuclease deficient mutant2 (d166a+e168a) from vaccinia virus
75 d1noya_
not modelled
97.7
13
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
76 c7jw6A_
not modelled
97.7
11
PDB header: rna binding proteinChain: A: PDB Molecule: exonuclease mut-7 homolog;PDBTitle: crystal structure of drosophila nibbler exo domain
77 d1yt3a3
not modelled
97.7
13
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
78 c2dtuA_
not modelled
97.7
13
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase;PDBTitle: crystal structure of the beta hairpin loop deletion variant of rb692 gp43 in complex with dna containing an abasic site analog
79 c1q8iA_
not modelled
97.6
18
PDB header: transferaseChain: A: PDB Molecule: dna polymerase ii;PDBTitle: crystal structure of escherichia coli dna polymerase ii
80 c1s5jA_
not modelled
97.6
18
PDB header: transferaseChain: A: PDB Molecule: dna polymerase i;PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
81 c1yt3A_
not modelled
97.6
14
PDB header: hydrolase,translationChain: A: PDB Molecule: ribonuclease d;PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
82 c2e6mA_
not modelled
97.5
16
PDB header: hydrolaseChain: A: PDB Molecule: werner syndrome atp-dependent helicase homolog;PDBTitle: structure of mouse werner exonuclease domain
83 c6k1dB_
not modelled
97.4
17
PDB header: hydrolaseChain: B: PDB Molecule: exonuclease 3'-5' domain-containing protein 2;PDBTitle: crystal structure of exd2 exonuclease domain soaked in mn and gmp
84 c4ktqA_
not modelled
97.3
21
PDB header: transferase/dnaChain: A: PDB Molecule: protein (large fragment of dna polymerase i);PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
85 c4oo1J_
not modelled
97.2
18
PDB header: hydrolase/rnaChain: J: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle: structure of an rrp6-rna exosome complex bound to poly(a) rna
86 c4xviA_
not modelled
97.0
14
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase nu;PDBTitle: binary complex of human polymerase nu and dna with the finger domain2 ajar
87 c4q5vA_
not modelled
97.0
8
PDB header: transferase/dna/rnaChain: A: PDB Molecule: dna polymerase alpha catalytic subunit;PDBTitle: crystal structure of the catalytic core of human dna polymerase alpha2 in ternary complex with an rna-primed dna template and aphidicolin
88 c4fydA_
not modelled
96.9
10
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase alpha catalytic subunit a;PDBTitle: crystal structure of yeast dna polymerase alpha bound to dna/rna and2 dgtp
89 c6vdeA_
not modelled
96.9
20
PDB header: transferaseChain: A: PDB Molecule: dna polymerase i;PDBTitle: full-length m. smegmatis pol1
90 c6v8pA_
not modelled
96.6
7
PDB header: dna binding proteinChain: A: PDB Molecule: dna polymerase zeta catalytic subunit;PDBTitle: structure of dna polymerase zeta (apo)
91 d2hbka2
not modelled
96.5
19
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
92 d1vk0a_
not modelled
96.5
14
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
93 c6v93A_
not modelled
95.8
8
PDB header: dna binding proteinChain: A: PDB Molecule: dna polymerase zeta catalytic subunit;PDBTitle: structure of dna polymerase zeta/dna/dntp ternary complex
94 c2hbkA_
not modelled
95.4
17
PDB header: hydrolase, gene regulationChain: A: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle: structure of the yeast nuclear exosome component, rrp6p, reveals an2 interplay between the active site and the hrdc domain; protein in3 complex with mn
95 c3cymA_
not modelled
94.1
21
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: uncharacterized protein bad_0989;PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
96 c5v5fA_
not modelled
93.7
16
PDB header: transferaseChain: A: PDB Molecule: at3g11770;PDBTitle: crystal structure of rice1 (pnt2)
97 c4nlbA_
not modelled
92.8
15
PDB header: hydrolaseChain: A: PDB Molecule: ribosomal rna processing protein 6;PDBTitle: crystal structure of the catalytic core of rrp6 from trypanosoma2 brucei
98 c3ikmD_
not modelled
91.5
18
PDB header: transferaseChain: D: PDB Molecule: dna polymerase subunit gamma-1;PDBTitle: crystal structure of human mitochondrial dna polymerase holoenzyme
99 c5fiqE_
not modelled
90.5
10
PDB header: hydrolaseChain: E: PDB Molecule: exd1;PDBTitle: exonuclease domain-containing 1 (exd1) in the native conformation
100 c5c0wK_
not modelled
90.1
19
PDB header: hydrolase/rnaChain: K: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle: structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
101 c4ybgA_
not modelled
90.0
12
PDB header: hydrolaseChain: A: PDB Molecule: protein maelstrom;PDBTitle: crystal structure of the mael domain of drosophila melanogaster2 maelstrom
102 d2py5a1
not modelled
87.8
12
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease
103 c4ztuA_
not modelled
87.6
16
PDB header: dna binding protein/dnaChain: A: PDB Molecule: dna polymerase subunit gamma-1;PDBTitle: structural basis for processivity and antiviral drug toxicity in human2 mitochondrial dna replicase
104 c3sahA_
not modelled
82.3
16
PDB header: hydrolaseChain: A: PDB Molecule: exosome component 10;PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site
105 c4o6hA_
not modelled
78.4
11
PDB header: hydrolaseChain: A: PDB Molecule: nucleoprotein;PDBTitle: 2.8a crystal structure of lymphocytic choriomeningitis virus2 nucleoprotein c-terminal domain
106 c7c4cA_
not modelled
74.4
16
PDB header: rna binding proteinChain: A: PDB Molecule: cchc-type domain-containing protein;PDBTitle: the crystal structure of trypanosoma brucei rnase d : gmp complex
107 c3q7cA_
not modelled
67.5
15
PDB header: hydrolaseChain: A: PDB Molecule: nucleoprotein;PDBTitle: exonuclease domain of lassa virus nucleoprotein bound to manganese
108 c2ex3I_
not modelled
47.9
11
PDB header: transferase/replicationChain: I: PDB Molecule: dna polymerase;PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
109 c4gveA_
not modelled
38.5
15
PDB header: viral proteinChain: A: PDB Molecule: nucleoprotein;PDBTitle: tacaribe nucleoprotein structure
