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Job DescriptionASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain]
Confidence99.15%DateMon Jun 7 16:50:03 BST 2021
Rank39Aligned Residues144
% Identity20%Templated1kfsa1
SCOP infoRibonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease
Resolution2.10

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40.........50.........60..
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Query Sequence  KQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYYE
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Template Sequence  APVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRE. . . . . . . . .
Template Known Secondary structure  SSSS
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   349350.........360.........370.........380.........390.........
 
   63......70.........80.........90.........100.........110.........120..
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Query Sequence  RGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRV
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Template Sequence  . . . . . . . . . . . RALELLKPLLE. DEKALKVGQNLKYDRGILANYGIELRGIAF. . . . . . .
Template Known Secondary structure  ...........T.
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   400.........410 .........420.........430.........440
 
   123......130.........140.........150.... .....160.
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Query Sequence  WHHRLADLAAYAAGKLNIDPTELEGLDAVAER. LGVPVVN. . . . . . . . . . . . . . . . . . . .
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Template Sequence  . . . . . . . . DTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALE
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SGGG


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   441........450.........460.........470.........480.........490..
 
   162.......170.........180..
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Query Sequence  . . RHSAIGDAAATAFCFDMLRHT
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Template Sequence  EAGRYAAEDADVTLQLHLKMWPD
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   493......500.........510.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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