Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 74.45% Date Mon Jun 7 16:50:03 BST 2021 Rank 106 Aligned Residues 139 % Identity 16% Template c7c4cA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:cchc-type domain-containing protein; PDBTitle: the crystal structure of trypanosoma brucei rnase d : gmp complex Resolution 2.27 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.						.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.
Query SS confidence																						.	.	.	.	.
Query Sequence		A	K	Q	L	I	V	V	D	L	E	T	T	G	L	D	Y	D	T	A	L	.	.	.	.	.	P	V	E	V	G	L	L	N	V	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P	K	A	M	E
Query Conservation																						.	.	.	.	.
Alig confidence																						.	.	.	.	.							.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	R	S	I	A	L	D	I	E	A	F	C	T	T	D	Q	A	K	Q	L	G	R	I	S	L	V	Q	A	C	S	.	.	D	A	K	P	V	V	F	L	F	D	V	L	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T		S												S	S	S			S			S									.	.	T	T	S	S											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	G	Y	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y	S	M	P	F	S	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																										.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																										.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	D	V	F	V	K	D	X	Q	S	L	L	S	.	D	R	E	I	R	K	L	F	F	D	C	R	R	D	V	E	A	L	S	C	Q	L	G	V	K	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.														T	.		T	T	S					S	S																.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.															.																										.	.	.	.	.	.
Template SS confidence
																118	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																								.											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	V	G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	.	L	G	V	P	V	V	N	R	H	S	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.											.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																		.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	P	E	G	V	L	D	L	Q	V	F	F	T	A	I	Q	W	K	L	R	S	V	N	R	R	S	G	X	G	Y	V	L	K	S	V	A	G	L	T	R	Q	E	G	D	S	A	V	Q	T	A	X	T	L	G	N	R
Template Known Secondary structure		.	.	.	.	.		S	S																				B																	G	G	G	G	S										S	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
																	165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L	R	H
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	W	D	I	R	P	L	P	D	H	F	L	E	Y	A	A	G	D	V	R	H	I	L	L	L	S	N	Y	L	V	G
Template Known Secondary structure				T	T		S	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
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