Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 98.65% Date Mon Jun 7 16:50:03 BST 2021 Rank 45 Aligned Residues 161 % Identity 17% Template c6r5kA_ PDB info PDB header:rna binding protein Chain: A: PDB Molecule:pan2-pan3 deadenylation complex catalytic subunit pan2; PDBTitle: cryo-em structure of a poly(a) rnp bound to the pan2-pan3 deadenylase Resolution 4.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.											.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.										.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.										.
Query Sequence		A	K	Q	L	I	V	V	D	L	E	T	T	G	L	D	Y	D	T	A	L	.	.	.	.	.	.	.	.	.	.	P	V	E	V	G	L	L	N	V	.	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A
Query Conservation																						.	.	.	.	.	.	.	.	.	.										.
Alig confidence																						.	.	.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		S	G	T	L	V	A	I	D	A	E	F	V	S	L	Q	S	E	L	C	E	I	D	H	I	R	P	K	R	T	A	L	A	R	I	S	I	I	R	G	E	E	G	E	L	Y	G	V	P	F	V	D	D	Y	V	V	N	T	N	H	I
Template Known Secondary structure		S	S																																						S	S	S	T	T	T	T												S
Template Predicted Secondary structure
Template SS confidence
		903	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.							70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.
Query Sequence		D	P	K	A	M	E	I	N	G	Y	Y	E	R	G	L	Y	R	E	A	.	.	.	.	.	.	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	A	F	D	S	T	I	V	A
Query Conservation																					.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.																.	.	.																	.
Template Conservation																																										.	.	.																	.
Template Sequence		E	D	Y	L	T	R	Y	S	G	I	L	P	G	D	L	D	P	E	K	S	T	K	R	L	V	R	R	N	V	V	Y	R	K	V	W	L	L	M	Q	L	.	.	.	G	C	V	F	V	G	H	G	L	N	N	D	F	K	H	I	.
Template Known Secondary structure		S				T	T	T	T								S	S	S		S	S					T	T	T	T												.	.	.	T					B	S	S									.
Template Predicted Secondary structure																																										.	.	.																	.
Template SS confidence
		969	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.				.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.		.
Predicted Secondary structure																																																				.								.
Query SS confidence																																																				.								.
Query Sequence		R	Q	R	V	T	Y	S	M	P	F	S	P	L	T	V	G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	.	L	G	V	P	V	V	N	.	R
Query Conservation																																																				.								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.					.	.															.								.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.					.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	N	V	P	R	N	Q	I	R	D	T	A	.	I	Y	F	L	.	.	Q	G	K	R	Y	L	S	L	R	Y	L	A	Y	V	L	L	G	M	N	I	Q	E	G	N
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T										B			.			T		.	.	B	T	T	B												S		T	T	T	T	S		T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.					.	.
Template SS confidence
																		1025	.	.	.	.	1030	.	.	.	.	.	.	.		.	.	1040	.			.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L	R	H	T	A	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	D	S	I	E	D	A	H	T	A	L	I	L	Y	K	K	Y	L	H	L	K	E	K
Template Known Secondary structure		T																						T
Template Predicted Secondary structure
Template SS confidence
		1066	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
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