Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 98.41% Date Mon Jun 7 16:50:03 BST 2021 Rank 56 Aligned Residues 148 % Identity 19% Template c5mdnB_ PDB info PDB header:transferase Chain: B: PDB Molecule:dna polymerase; PDBTitle: structure of the family b dna polymerase from the hyperthermophilic2 archaeon pyrobaculum calidifontis Resolution 2.80 Å

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		4	.	.	.	.	.	10	.	.	.	.					.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		Q	L	I	V	V	D	L	E	T	T	G	.	.	.	.	L	D	Y	D	T	A	L	P	V	E	V	G	L	L	N	V	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P	K	A	M	E	I	N	G
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	L	A	F	D	I	E	V	Y	N	E	R	G	S	P	D	P	L	R	D	P	V	V	M	L	A	V	K	T	S	D	G	R	E	E	V	F	E	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure													S	S	S	S			T	T	T	S										S	S	S								B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		Y	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	.	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y	S	M	P	F	S	P	L	T
Query Conservation																																							.
Alig confidence		.	.	.	.	.	.	.	.	.																													.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	G	R	D	D	R	R	V	I	R	G	F	V	D	F	V	K	E	F	D	P	D	V	I	V	G	Y	N	S	N	G	F	D	W	P	Y	L	S	E	R	A	K	A	L	G	V	P	L	R	V	D	R
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T	T	B																		S					S	S	T	T	T	T													T						S	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
										119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																															.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																															.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	V	G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	L	G	V	P	V	V	N	R	H	S	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.																																															.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																															.	.	.	.	.	.
Template Conservation
Template Sequence		L	G	G	V	P	Q	Q	S	V	Y	G	H	W	S	V	V	G	R	A	N	V	D	L	Y	N	I	V	D	E	F	P	E	I	K	V	K	T	L	D	R	V	A	E	Y	F	G	V	M	K	R	S	E	R	V	L	I	P	G	H	K
Template Known Secondary structure		T	S							G	G	G				B	T	T	B										T	T		T	T		S	S										T	T	S			S	T	T	S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
																			165	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	E	Y	W	N	D	P	A	K	R	P	T	L	M	R	Y	V	L	D	D	V	R	S	T	L	G	L	A	E	K	L
Template Known Secondary structure							S		T	T	T
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
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