Return to main results Retrieve Phyre Job Id

Job DescriptionASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain]
Confidence87.61%DateMon Jun 7 16:50:03 BST 2021
Rank103Aligned Residues92
% Identity16%Templatec4ztuA_
PDB info PDB header:dna binding protein/dnaChain: A: PDB Molecule:dna polymerase subunit gamma-1; PDBTitle: structural basis for processivity and antiviral drug toxicity in human2 mitochondrial dna replicase
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   87..90.........100.........110.........120.........130.........140....
Predicted Secondary structure 

























..
Query SS confidence 

























































. .
Query Sequence  RGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGRVWHHRLADLAAYAAGKLNIDPTE. .
Query Conservation             

   
                                         ..
Alig confidence 




















.



































..
Template Conservation    














 


. 
  
  













  
 

  
 
  
   
Template Sequence  QEQLVVGHNVSFDRAHIREQY. LIQGSRMRFLDTMSMHMAISGLSSFQRSLWIAAKAISS
Template Known Secondary structure 


TTTTBGGGS.SSS






TT



S
Template Predicted Secondary structure 





.
















Template SS confidence 



























































   262.......270.........280.. .......290.........300.........310.........320
 
   145....150..... ....160.... .....170...
Predicted Secondary structure  ........


..








.....................
Query SS confidence  . . . . . . . .










. .








. . . . . . . . . . . . . . . . . . . . .








Query Sequence  . . . . . . . . LEGLDAVAERL. . GVPVVNRHS. . . . . . . . . . . . . . . . . . . . . AIGDAAATA
Query Conservation  ........   
  
    ..

     
 .....................

 

  
 
Alig confidence  ........










..








.....................








Template Conservation    
   

 


 

  


    
 
  

 
      

   

 

 


 

 

 
Template Sequence  WDWLDISSVNSLAEVHRLYVGGPPLEKEPRELFVKGTMKDIRENFQDLMQYCAQDVWATH
Template Known Secondary structure  SSGGGT


S
T

S




SS
S
STT
Template Predicted Secondary structure 
















Template SS confidence 



























































   345....350.........360.........370.........380.........390.........400....
 
   174.....
Predicted Secondary structure 
Query SS confidence 





Query Sequence  FCFDML
Query Conservation   
   
Alig confidence 





Template Conservation   
  

Template Sequence  EVFQQQ
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 





   405....410
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D