Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 97.03% Date Mon Jun 7 16:50:03 BST 2021 Rank 86 Aligned Residues 155 % Identity 14% Template c4xviA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase nu; PDBTitle: binary complex of human polymerase nu and dna with the finger domain2 ajar Resolution 3.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.								.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.											.	.	.	.	.	.	40	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	I	V	V	.	.	.	.	.	.	.	D	L	E	T	T	G	L	D	Y	D	T	A	L	P	V	E	V	G	L	L	N	V	D	T	G	.	.	.	.	.	.	.	.	.	.	E	S	L	Y	F	V	P	H	I	T	V	E	Q
Query Conservation							.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	L	V	I	T	V	M	Y	T	D	G	S	T	Q	L	G	A	D	Q	T	P	V	S	S	V	R	G	I	V	V	L	V	K	R	Q	A	E	G	C	G	P	V	L	E	G	F	V	S	D	D	P	C	I	Y	I	Q	I	E	H
Template Known Secondary structure		S									T	T	S		B	T	T	S	S		S	S		S	S											S	S										S	S	S		S	S								S
Template Predicted Secondary structure
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	A	A	D	P	K	A	M	E	I	N	G	Y	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	A	F	D	S	T	I	V	A	R	Q
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	A	I	W	D	Q	E	Q	E	A	H	Q	Q	F	A	R	N	V	L	F	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	M	K	C	K	C	P	V	I	C	F	N	A	K	D	F	V	R	I	V	L	Q	F	F
Template Known Secondary structure			S	S																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S					S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.																.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																		.										.	.
Query SS confidence																																																		.										.	.
Query Sequence		R	V	T	Y	S	M	P	F	S	P	L	T	V	G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	.	L	G	V	P	V	V	N	R	H	.	.
Query Conservation																																																		.										.	.
Alig confidence															.	.	.	.	.	.	.	.	.																											.										.	.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		G	N	D	G	S	W	K	H	V	A	D	F	I	.	.	.	.	.	.	.	.	.	G	L	D	P	R	I	A	A	W	L	I	D	P	S	D	A	T	P	S	F	E	D	L	V	E	K	Y	C	E	K	S	I	T	V	K	V	N	S
Template Known Secondary structure		T	T	S			G	G	G	S	T	T			.	.	.	.	.	.	.	.	.													T	T		S												S		S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.										.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
														164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	S	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L	R	H	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	Y	G	N	S	S	R	N	I	V	N	Q	N	V	R	E	N	L	K	T	L	Y	R	L	T	M	D	L	C	S	K
Template Known Secondary structure			B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Michael Sternberg   Disclaimer Terms and Conditions		Phyre2 is part of Genome3D