Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 98.36% Date Mon Jun 7 16:50:03 BST 2021 Rank 59 Aligned Residues 140 % Identity 14% Template c4x0pB_ PDB info PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase theta; PDBTitle: ternary complex of human dna polymerase theta c-terminal domain2 binding ddatp opposite a tetrahydrofuran ap site analog Resolution 3.91 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Q	L	I	V	V	D	L	E	T	T	G	L	D	Y	D	T	A	L	P	V	E	V	G	L	L	N	V	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P	K	A	M	E	I	N	G	Y	Y
Query Conservation
Alig confidence																			.															.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.															.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	K	K	R	F	S	I	S	L	A	C	E	K	I	R	D	D	.	T	L	V	V	G	L	A	V	C	W	G	G	R	D	.	.	.	.	.	.	A	Y	Y	F	S	L	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T		S										S					.										S	S	S	S		.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.															.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1846	.	.	.	1850	.	.	.	.	.	.	.	.	.	1860	.	.		.	.	.	.	.	.	.	1870	.	.	.	.	.	.							.	.	.	1880	.	.	.	.
		62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	.	.	L	R	G	N	T	F	A	G	S	N	P	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y	S	M	P	F	S	P	L	T	V
Query Conservation																										.	.
Alig confidence		.	.	.	.	.	.																			.	.																						.	.	.
Template Conservation		.	.	.	.	.	.																																										.	.	.
Template Sequence		.	.	.	.	.	.	P	S	L	T	L	K	D	R	M	W	Y	L	Q	S	C	L	R	K	E	S	D	K	E	C	S	V	V	I	Y	D	F	I	Q	S	Y	K	I	L	L	L	S	.	.	.	C	G	I	S	L	E	Q	S	Y	E
Template Known Secondary structure		.	.	.	.	.	.			S		S												B			S	S								S	S											T	.	.	.	S					B	S
Template Predicted Secondary structure		.	.	.	.	.	.																																										.	.	.
Template SS confidence
								1937	.	.	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.				.	.	1980	.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.													.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence		G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	L	.	.	.	.	.	.	.	.	.	.	.	.	G	V	P	V	V	N	R	H	S	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	D	P	K	V	A	C	W	L	L	D	P	D	S	Q	E	P	T	L	H	S	I	V	T	S	F	L	P	H	E	L	P	L	L	E	G	M	E	T	S	Q	G	I	Q	S	L	G	L	N	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.											T	T	S												T			T	T	G	G	G	G	G	G	T				S	S		T	T	T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													1988	.	1990	.	.	.	.	.	.	.	.	.	2000	.	.	.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.	.	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.
											165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L	R	H	T
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	S	E	H	S	G	R	Y	R	A	S	V	E	S	I	L	I	F	N	S	M	N	Q	L	N	S	L
Template Known Secondary structure		S	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		2037	.	.	2040	.	.	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.

No model constructed - rank, confidence too low

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
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