Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 100.00% Date Mon Jun 7 16:50:03 BST 2021 Rank 2 Aligned Residues 178 % Identity 18% Template c4rg8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:exonuclease i; PDBTitle: structural and biochemical studies of a moderately thermophilic2 exonuclease i from methylocaldum szegediense Resolution 2.12 Å Model Dimensions (Å) X:47.244 Y:54.756 Z:31.471

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																				.	.	.
Query SS confidence																																				.	.	.
Query Sequence		Q	L	I	V	V	D	L	E	T	T	G	L	D	Y	D	T	A	L	P	V	E	V	G	L	L	N	V	D	T	G	E	S	L	Y	.	.	.	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P	K	A	M	E	I	N	G	Y
Query Conservation																																				.	.	.
Alig confidence																																				.	.	.
Template Conservation
Template Sequence		S	L	Y	W	Y	D	Y	E	T	F	G	T	D	P	R	R	D	R	P	A	Q	F	A	G	I	R	T	D	L	E	L	N	P	I	G	E	P	V	T	L	F	C	K	P	A	R	D	V	L	P	V	P	E	A	C	L	I	T	G	I
Template Known Secondary structure											S	S	S		T	T	T	S												T	T	S		B		S							B				T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.																								.
Query SS confidence																																					.																								.
Query Sequence		Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	.	P	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y	S	M	P	F	S	P	L	T	.
Query Conservation																																					.																								.
Alig confidence																										.											.																								.
Template Conservation																										.
Template Sequence		T	P	Q	M	A	A	E	R	G	L	K	E	A	E	F	I	T	R	I	H	E	Q	F	S	.	V	P	G	T	C	V	A	G	Y	N	N	I	R	F	D	D	E	V	T	R	H	C	L	Y	R	N	L	F	D	P	Y	E	R	E	W
Template Known Secondary structure											B														T	.	S	T	T						S	S		T	T	T												T	T	S		S	S
Template Predicted Secondary structure																										.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.									.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																						.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.
Query Sequence		V	G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	.	.	.	.	.	.	.	.	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	L	G	V	P	V	V	N	R	H	S	A	I	G	D	A	A
Query Conservation																						.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.																					.	.
Template Conservation																																																		.	.
Template Sequence		R	N	G	N	S	R	W	D	I	I	D	M	L	R	L	T	R	A	L	R	P	E	G	I	E	W	P	V	D	G	S	G	K	P	S	L	R	L	E	A	L	T	V	A	N	G	I	Q	.	.	H	A	H	D	A	L	A	D	V	R
Template Known Secondary structure		G	G	G						S													T	T	S				B		T	T	S		B											T	T			.	.				S
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	A	F	C	F	D	M	L	R	H	T	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	T	I	A	V	A	R	L	V	R	E	R	Q	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.

---

Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Michael Sternberg   Disclaimer Terms and Conditions		Phyre2 is part of Genome3D