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Job DescriptionASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain]
Confidence97.15%DateMon Jun 7 16:50:03 BST 2021
Rank85Aligned Residues131
% Identity18%Templatec4oo1J_
PDB info PDB header:hydrolase/rnaChain: J: PDB Molecule:exosome complex exonuclease rrp6; PDBTitle: structure of an rrp6-rna exosome complex bound to poly(a) rna
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.
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Query Sequence  AKQLIVVDLETTGLDYDTALPVEVGLLNVDTGESLYFVPHITVEQLAAADPKAMEINGYY
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Template Sequence  NTKEIAVNLEHHDYRSYYGIVCLMQISTRERDYLV. . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  T
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   231........240.........250.........260.....
 
   62.......70.........80.........90.........100.........110.........120.
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Query Sequence  ERGLYREALTEQQTAVAWGEVQDWLRGNTFAGSNPAFDSTIVARQRVTYSMPFSPLTVGR
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Template Sequence  . . . . . . DTLKLRENLHILNEVFT. NPSIVKVFHGAFMDIIWLQRDLGLYVVGLF. . . . . .
Template Known Secondary structure  ......SSSSSTTGGGGT.
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   266...270.........280.. .......290.........300.........310..
 
   122.......130.........140.........150.... .....160....
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Query Sequence  VWHHRLADLAAYAAGKLNIDPTELEGLDAVAER. LGVPVVNRHS. . . . . . . . . . . . . . . .
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Template Sequence  . . . . . . . . . DTYHASKAIGLP. . RHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTAY
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   313......320.... .....330.........340.........350.........360.
 
   165....170.........180.
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Query Sequence  AIGDAAATAFCFDMLRH
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Template Sequence  ARADTHFLLNIYDQLRN
Template Known Secondary structure  T
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   362.......370........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Lawrence Kelley, Michael Sternberg 
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