Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 98.48% Date Mon Jun 7 16:50:03 BST 2021 Rank 53 Aligned Residues 176 % Identity 14% Template c2gv9A_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase Resolution 2.68 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		4	.	.	.	.	.	10	.	.				.	.						.	.	.	.	.			20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.
Predicted Secondary structure											.	.	.			.	.	.	.	.						.	.
Query SS confidence											.	.	.			.	.	.	.	.						.	.
Query Sequence		Q	L	I	V	V	D	L	E	T	.	.	.	T	G	.	.	.	.	.	L	D	Y	D	T	.	.	A	L	P	V	E	V	G	L	L	N	V	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P	K
Query Conservation											.	.	.			.	.	.	.	.						.	.
Alig confidence											.	.	.			.	.	.	.	.						.	.
Template Conservation
Template Sequence		K	L	M	C	F	D	I	E	C	K	A	G	G	E	D	E	L	A	F	P	V	A	G	H	P	E	D	L	V	I	Q	I	S	C	L	L	Y	D	L	S	T	T	A	L	E	H	V	L	L	F	S	L	G	S	C	D	L	P	E	S
Template Known Secondary structure														S	S		T	T	S				T	T	S	T	T	S												T	T	T												S
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		54	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure					.	.																																									.
Query SS confidence					.	.																																									.
Query Sequence		A	M	E	.	.	I	N	G	Y	Y	E	R	G	L	Y	R	E	A	L	T	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	.	A	F	D	S	T	I	V	A	R	Q	R	V	T	Y
Query Conservation					.	.																																									.
Alig confidence					.	.																																									.
Template Conservation
Template Sequence		H	L	N	E	L	A	A	R	G	L	P	T	P	V	V	L	E	F	D	S	E	F	E	M	L	L	A	F	M	T	L	V	K	Q	Y	G	P	E	F	V	T	G	Y	N	I	I	N	F	D	W	P	F	L	L	A	K	L	T	D	I
Template Known Secondary structure									T	T										S	S																		S					S	S	T	T	T	T												T
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.
		111	.											.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.																																											.
Query SS confidence				.	.	.	.	.	.	.	.	.	.																																											.
Query Sequence		S	M	.	.	.	.	.	.	.	.	.	.	P	F	S	P	L	T	V	G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A	E	R	.	L	G	V	P	V
Query Conservation				.	.	.	.	.	.	.	.	.	.																																											.
Alig confidence				.	.	.	.	.	.	.	.	.	.																																											.
Template Conservation
Template Sequence		Y	K	V	P	L	D	G	Y	G	R	M	N	G	R	G	V	F	R	V	W	D	K	I	K	V	N	G	M	V	N	I	D	M	Y	G	I	I	T	D	K	I	K	L	S	S	Y	K	L	N	A	V	A	E	A	V	L	K	D	K	K
Template Known Secondary structure		T					T	T	T	S	S	B	S	S	S												T	T	B										T	T	T				S											T	S
Template Predicted Secondary structure
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
		160	.	.	.	.																					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	N	R	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	D	L	S	Y	R	D	I	P	A	Y	Y	A	T	G	P	A	Q	R	G	V	I	G	E	Y	C	I	Q	D	S	L	L	V	G	Q	L	F	F	K	F
Template Known Secondary structure						T	T	T
Template Predicted Secondary structure
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.

No model constructed - rank, confidence too low

---

Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Michael Sternberg   Disclaimer Terms and Conditions		Phyre2 is part of Genome3D