Job Description ASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain] Confidence 97.66% Date Mon Jun 7 16:50:03 BST 2021 Rank 78 Aligned Residues 176 % Identity 13% Template c2dtuA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase; PDBTitle: crystal structure of the beta hairpin loop deletion variant of rb692 gp43 in complex with dna containing an abasic site analog Resolution 2.37 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.							.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.
Query Sequence		Q	L	I	V	V	D	L	E	T	T	G	L	D	Y	.	.	.	.	.	.	D	T	A	L	P	V	E	V	G	L	L	N	V	D	T	G	E	S	L	Y	F	V	P	H	I	T	V	E	Q	L	A	A	A	D	P	K	A	M	E	I
Query Conservation																.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	A	N	F	D	I	E	V	T	S	P	D	G	F	P	E	P	S	Q	A	K	H	P	I	D	A	I	T	H	Y	D	S	I	D	D	R	F	Y	V	F	D	L	L	N	S	P	Y	G	N	V	E	E	W	S	I	E	I	A	A
Template Known Secondary structure													S	S	S	S			T	T	T			S										T	T	T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		58	.	60	.	.	.	.	.	.	.	.	.	70	.												.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.		.	.	.	100	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.																										.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.																										.
Query Sequence		N	G	Y	Y	E	R	G	L	Y	R	E	A	L	T	.	.	.	.	.	.	.	.	.	.	.	E	Q	Q	T	A	V	A	W	G	E	V	Q	D	W	L	R	G	N	T	F	A	G	S	N	P	.	A	F	D	S	T	I	V	A	R
Query Conservation																.	.	.	.	.	.	.	.	.	.	.																										.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation
Template Sequence		K	L	Q	E	Q	G	G	D	E	V	P	S	E	I	I	D	K	I	I	Y	M	P	F	D	N	E	K	E	L	L	M	E	Y	L	N	F	W	Q	Q	K	T	P	V	I	L	T	G	W	N	V	E	S	F	A	I	P	Y	V	Y	N
Template Known Secondary structure		S		G	G	G	T						T	T	T	G	G	G							S	S															T			S					S	S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.														.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	V	T	Y	S	M	P	.	.	.	.	.	.	.	.	.	.	.	.	.	F	S	P	L	T	V	G	R	V	W	H	H	R	L	A	D	L	A	A	Y	A	A	G	K	L	N	I	D	P	T	E	L	E	G	L	D	A	V	A
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.																							.
Template Conservation																																													.
Template Sequence		R	I	K	N	I	F	G	E	S	T	A	K	R	L	S	P	H	R	K	T	R	V	K	V	G	E	I	I	T	L	F	G	I	S	V	L	D	Y	I	D	L	Y	K	.	K	F	S	F	T	N	Q	P	S	Y	S	L	D	Y	I	S
Template Known Secondary structure							S						G	G	G	S	T	T	S						S	S	S					T	T												.			S					S
Template Predicted Secondary structure																																													.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		153	.		.	.	.	.	.	160	.	.	.	.																	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	R	.	L	G	V	P	V	V	N	R	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	G	D	A	A	A	T	A	F	C	F	D	M	L	R
Query Conservation				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	F	E	L	N	V	G	K	L	K	Y	D	G	P	I	S	K	L	R	E	S	N	H	Q	R	Y	I	S	Y	N	I	I	A	V	Y	R	V	L	Q	I	D	A	K	R	Q
Template Known Secondary structure						S			S				S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
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