Protein Project

I've assigned each of you two unique proteins to work with. These proteins will be the subject of a review paper you will write using the tools and techniques we will discuss during the semester. On the final day of class, you will turn in a 10-14 page review paper describing both of your proteins. The grading rubric containing a detailed explanation of what is expected for the assignment is below.

Protein Project Review Article Rubric

Protein Assignments:

Alicia Balent

Aequorea victoria Green Fluorescent Protein (6FWW)

Aequorea victoria Extra-superfolder GFP (5B61)

 

Tamara Bright

Homo sapiens APAF-1 (3J2T)

Homo sapiens Caspase-9 (2AR9)

 

Lindsey Burton

Salmonella typhimurium Sucrose-specific porin (1A0S)

Dickeya didantii KdgM Porin (4FQE)

 

Nancy Cisse

Torpedo californica Acetylcholinesterase (2ACE)

Homo sapiens Butyrylcholinesterase (3O9M)

 

Michael Gladden

NusG (1NPR, 2K06, 2JVV)

Methanococcus maripaludis RadA recombinase (3ETL)

 

Connor Hogan

Homo sapiens Macrophage Metalloelastase (4H30)

Homo sapiens FKBP52 (4LAW)

 

Kameron Johnson

Leucosporidium Ice Binding Protein (3UYV)

Streptococcus pneumoniae Surface Protein (3ZPP)

 

Bethany Mack

Trypsanosoma brucei Triose Phosphate Isomerase (4JEQ)

Trypsanosoma brucei Thiamin Phosphate Synthase (2Y70)

 

London Mack

Arabidopsis thalianaUV-B Sensing Protein, UVR8 (4D9S)

Unclassified Gamma Proteobacterium HOT75 Proteorhodopsin (4KNF)

 

Blake McCloskey

SARS Coronavirus Main Protease (4HI3)

Ruminococcus flavefaciens Cellulosome-related Protein Module (4EYZ)

 

Elicia Murtha

Streptococcus mutans Glucan Binding Protein C (5UQZ)

Streptococcus mutansGlucansucrase (3AIB)

 

Darien Nguyen

Escherichia coli NAD+ Depedent DNA Ligase (2OWO)

Homo sapiens ATP-dependent DNA Ligase (1X9N)

 

Cayla Odom

Porphyromonas gingivalis Malate Dehydrogenase (3FI9)

Porphyromonas gingivalis Glycosyltransferase(3PNN)

 

Alyssa Petty

Escherichia coli Sensitivity to Lysis Protein D (2K8I)

Escherichia coli FKBP-16, SlpA (2M2A)

 

Katrina Schneider

Secreted Aspartic Protease from Candida albicans (1ZAP)

HIV Protease (1HVR)

 

Syjaddia Snider

Homo sapiens CDK2 (3ULI, 4FR3, 4FKI, 4FKJ, 4FKL)

Homo sapiens CDK4 (2W99, 2W9Z, 2W9F, 3G33)

 

Thomas Sullivan

Purple acid phytase (PAPhy, PDB entry 4kbp)

Beta-propeller phytase (BPPhy, PDB entry 3amr)

 

Evan Thibodeaux

Homo sapiens Sphingosine Kinase 1 (3VZB, 3VZC, 3VZD)

Escherichia coli Integral Membrane Diacylglycerol Kinase (3ZE3)

 

Nghi Tran

Ternary Complex of the Beta-2 Adrenergic Receptor (3SN6)

Insulin / Insulin Receptor Complex (3W11, 3W12, 3W13, 3W14)

 

Sheandria Walls

Escherichia coli Triose Phophate Isomerase (4IOT)

Escherichia coli Enolase (6BFY)