BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (145 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9ZX64 Gp13 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX6...   220   9e-57
UniRef50_C5IY92 Gp12 n=4 Tax=Angel-like phages RepID=C5IY92_9CAUD     176   1e-43

>UniRef50_Q9ZX64 Gp13 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX64_BPMT4
          Length = 139

 Score =  220 bits (561), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 93/141 (65%), Positives = 104/141 (73%), Gaps = 6/141 (4%)

Query: 4   LVPPVGPLTAARRYLLDELAARTNPLPVSQVVPEGSPTSYTLLSRPGTSTDVFLQHSLIR 63
           LVP VGPL AAR YLLDELAAR NPLPV    PEG P+SY LLSRPG+  DVFL H LIR
Sbjct: 3   LVPSVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLGHFLIR 62

Query: 64  LRTFDDDLVRLERNADLLHRLMLHAVHKHIVVPAAADDPGGEVWITGAKHEFGPASLDDK 123
           +R FD D+VRLERNADLLH L+  A H+ +  P       G+VWITGA H +GPA LDD 
Sbjct: 63  VRVFDSDVVRLERNADLLHALLCGANHRKVHTPE------GDVWITGAAHHYGPADLDDP 116

Query: 124 RVPLPGMQSAVFWTIGLRPER 144
            VPL GMQ+AVFWTIGL+P R
Sbjct: 117 DVPLFGMQAAVFWTIGLKPAR 137


>UniRef50_C5IY92 Gp12 n=4 Tax=Angel-like phages RepID=C5IY92_9CAUD
          Length = 147

 Score =  176 bits (447), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 6/138 (4%)

Query: 6   PPVGPLTAARRYLLDELAARTNPLPVSQVVPEGSPTSYTLLSRPGTSTDVFLQHSLIRLR 65
           P + P  A R YL+  L  R   L V    P G PT Y L+++  +     +   LIR R
Sbjct: 9   PTMEPAIACRAYLMRRLDDRGIDLSVGATPPAGKPTRYVLVNQVDSRRRGPVADYLIRTR 68

Query: 66  TFDDDLVRLERNADLLHRLMLHAVHKHIVVPAAADDPGGEVWITGAKHEFGPASL-DDKR 124
            ++ D     ++A LLH  +L A    IV P       G++W+TG +H  GP+ + DD  
Sbjct: 69  VYNADAYECGQHATLLHAALLGAAQARIVFPDV-----GQLWVTGTEHVSGPSDITDDDT 123

Query: 125 VPLPGMQSAVFWTIGLRP 142
             L G   +VFWT+ L+P
Sbjct: 124 TSLFGQAISVFWTVALKP 141


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q9ZX64 Gp13 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX6...   220   9e-57
UniRef50_C5IY92 Gp12 n=4 Tax=Angel-like phages RepID=C5IY92_9CAUD     176   1e-43

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_Q9ZX64 Gp13 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX64_BPMT4
          Length = 139

 Score =  220 bits (561), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 93/141 (65%), Positives = 104/141 (73%), Gaps = 6/141 (4%)

Query: 4   LVPPVGPLTAARRYLLDELAARTNPLPVSQVVPEGSPTSYTLLSRPGTSTDVFLQHSLIR 63
           LVP VGPL AAR YLLDELAAR NPLPV    PEG P+SY LLSRPG+  DVFL H LIR
Sbjct: 3   LVPSVGPLVAARAYLLDELAARANPLPVGANPPEGEPSSYALLSRPGSDRDVFLGHFLIR 62

Query: 64  LRTFDDDLVRLERNADLLHRLMLHAVHKHIVVPAAADDPGGEVWITGAKHEFGPASLDDK 123
           +R FD D+VRLERNADLLH L+  A H+ +  P       G+VWITGA H +GPA LDD 
Sbjct: 63  VRVFDSDVVRLERNADLLHALLCGANHRKVHTPE------GDVWITGAAHHYGPADLDDP 116

Query: 124 RVPLPGMQSAVFWTIGLRPER 144
            VPL GMQ+AVFWTIGL+P R
Sbjct: 117 DVPLFGMQAAVFWTIGLKPAR 137


>UniRef50_C5IY92 Gp12 n=4 Tax=Angel-like phages RepID=C5IY92_9CAUD
          Length = 147

 Score =  176 bits (447), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 6/138 (4%)

Query: 6   PPVGPLTAARRYLLDELAARTNPLPVSQVVPEGSPTSYTLLSRPGTSTDVFLQHSLIRLR 65
           P + P  A R YL+  L  R   L V    P G PT Y L+++  +     +   LIR R
Sbjct: 9   PTMEPAIACRAYLMRRLDDRGIDLSVGATPPAGKPTRYVLVNQVDSRRRGPVADYLIRTR 68

Query: 66  TFDDDLVRLERNADLLHRLMLHAVHKHIVVPAAADDPGGEVWITGAKHEFGPASL-DDKR 124
            ++ D     ++A LLH  +L A    IV P       G++W+TG +H  GP+ + DD  
Sbjct: 69  VYNADAYECGQHATLLHAALLGAAQARIVFPDV-----GQLWVTGTEHVSGPSDITDDDT 123

Query: 125 VPLPGMQSAVFWTIGLRP 142
             L G   +VFWT+ L+P
Sbjct: 124 TSLFGQAISVFWTVALKP 141


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.308    0.129    0.371 

Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,500,390
Number of Sequences: 3077464
Number of extensions: 18034768
Number of successful extensions: 54192
Number of sequences better than 1.0e-01: 2
Number of HSP's better than  0.1 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54182
Number of HSP's gapped (non-prelim): 4
length of query: 145
length of database: 1,040,396,356
effective HSP length: 109
effective length of query: 36
effective length of database: 704,952,780
effective search space: 25378300080
effective search space used: 25378300080
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 87 (38.2 bits)