BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (237 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX0... 252 6e-66 UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJ... 97 6e-19 UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3... 78 3e-13 UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Ta... 75 1e-12 UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax... 71 3e-11 UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verruc... 69 2e-10 UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas p... 55 1e-06 UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Str... 52 2e-05 UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collins... 50 5e-05 UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opituta... 47 4e-04 UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobi... 45 0.001 UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteoba... 45 0.002 UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncu... 45 0.002 UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tric... 44 0.005 UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus lichenifo... 44 0.006 UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminoc... 43 0.008 UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=... 43 0.008 UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A... 43 0.011 UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum ... 42 0.014 UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostri... 42 0.015 UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus ... 42 0.015 UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella l... 42 0.018 UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Ta... 41 0.026 UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans ... 41 0.028 UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillu... 41 0.038 UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacteri... 40 0.078 UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter h... 40 0.078 >UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX08_BPMT4 Length = 213 Score = 252 bits (644), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 133/193 (68%), Positives = 157/193 (81%), Gaps = 9/193 (4%) Query: 30 EHAKAAAAELLLDMVPAESYDVLYAALSARVTYERNGGRQLRMFVPGKPAPQGSKDFMGF 89 + AK AAA+ +L M+PA++++ L AL ARVT +RNG RQLR+FVPG+PAPQGSKDF GF Sbjct: 9 DEAKLAAADAVLAMLPADAHEALREALHARVTGDRNGSRQLRLFVPGRPAPQGSKDFKGF 68 Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 K G AILKESS AVGPWRER+ALA+A A+L+ GLPVL K++ + AS+TFV Sbjct: 69 SKT---------GKAILKESSDAVGPWRERVALAAASAILAEGLPVLAKEFSIAASVTFV 119 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG 209 MPRP+G PK TPPAVKRPDLDKLARA+LDGLTDVVW+DDSQV DLH RKVLAEL+Q PG Sbjct: 120 MPRPAGAPKRSTPPAVKRPDLDKLARAILDGLTDVVWIDDSQVVDLHCRKVLAELTQPPG 179 Query: 210 CHMRIASPGWGDE 222 H+RIASPGWGDE Sbjct: 180 AHIRIASPGWGDE 192 >UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJU5_9CAUD Length = 151 Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 54/147 (36%), Positives = 82/147 (55%), Gaps = 7/147 (4%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ FVPG APQGSK+ + G ++++S + PWR + + + AM Sbjct: 2 EIDFFVPGLAAPQGSKNSYTIR----NKAGKVVGVNTVEQNSKTLRPWRADVKVFAQKAM 57 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY-TPPAVKRPDLDKLARAVLDGLTDVVWL 187 G + D + FVM RPSGTPK+ TPPAVK+PDLDKL RA+ D L V+ Sbjct: 58 QERGQQICDD--AIYLHCDFVMKRPSGTPKTRRTPPAVKKPDLDKLIRAIGDALKGTVYT 115 Query: 188 DDSQVDDLHARKVLAELSQQPGCHMRI 214 +DS++ ++ A K +AE+ + PG + + Sbjct: 116 EDSRIVEIRATKRIAEIGETPGVFIHV 142 >UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3_9ACTO Length = 228 Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 83/165 (50%), Gaps = 19/165 (11%) Query: 62 YERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAI--LKESSAAVGPWRER 119 Y N L V G P PQGSK +G+ ++ T G I ++ESS V PWR++ Sbjct: 72 YPWNTHPALTATVHGLPGPQGSKTPIGYGRS------RTTGKTIPLMRESSTKVKPWRDK 125 Query: 120 IALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPK-SYTPPAVKRPDLDKLARAVL 178 + A+ A L P+ PV A +TF MP+P PK T PAV PD+DKL R+ Sbjct: 126 VQ-AAITAALHTSAPLAG---PVYAHITFTMPKPVRAPKRRRTYPAVT-PDIDKLERSTY 180 Query: 179 DGLTD-VVWLDDSQVDDLHARKVLAELS----QQPGCHMRIASPG 218 D +T W DD V + HARKV + QPG +R+ + G Sbjct: 181 DAITKAAAWKDDGCVIESHARKVYPDEHPDALDQPGALIRLYTLG 225 >UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Tax=Corynebacterium jeikeium ATCC 43734 RepID=C8RQI5_CORJE Length = 143 Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 72/145 (49%), Gaps = 17/145 (11%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 L FVPG APQGSK+ +++ + +L ESS V PWR+ + S A Sbjct: 8 LTFFVPGIAAPQGSKN--AYRRGQK---------IVLVESSKKVKPWRDTV---SQVARF 53 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 P+ V ++ FVMPR PP V++PDLDK+ RAV D LT + + DD Sbjct: 54 VCKRPI---DGAVTVAVHFVMPRTKAMRDKPAPPMVQKPDLDKMLRAVNDALTGIAYADD 110 Query: 190 SQVDDLHARKVLAELSQQPGCHMRI 214 SQ+ L K A ++ G H+ I Sbjct: 111 SQIVRLTGSKRRAAPGEKTGAHITI 135 >UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F4F8 Length = 171 Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 79/153 (51%), Gaps = 13/153 (8%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 L + V G PQGSK +G+ ++ + + ++KESSA V PWR++++ A A+L Sbjct: 20 LAIAVYGTAGPQGSKSPVGWGRSRKTG----KNIPLMKESSAKVKPWRDKVSAAITAAIL 75 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSY-TPPAVKRPDLDKLARAVLDGLTDV-VWL 187 L V A +TF M +P PK T PAV PD+DKL RA D +T W Sbjct: 76 RGDAKPLHGA--VYAEITFTMAKPGSRPKRRRTYPAVS-PDIDKLERATYDAITTAKAWE 132 Query: 188 DDSQVDDLHARKVL----AELSQQPGCHMRIAS 216 DD +V + H RKV + QPG +R+ + Sbjct: 133 DDGRVIENHNRKVYPGEHPDALDQPGAVIRLYT 165 >UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C6C Length = 164 Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 19/153 (12%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADA 127 ++L F+PG PAP GSK F+G K T+ ++ + WR + A+ + Sbjct: 3 QRLSFFIPGVPAPGGSKRFVGIGKK-------TKRAILVDAAGQKNKDWRTAVGWAAHEH 55 Query: 128 MLSAGLPVLDKKYPVRASLTFVMPRPSGT--PKSYTPPA----VKRPDLDKLARAVLDGL 181 L +R + TF MPRP G + P A + RPD KLAR+ D L Sbjct: 56 FKGEVL-----TGALRVTFTFFMPRPKGHHGKRGLLPSAPAFPITRPDALKLARSTEDAL 110 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRI 214 T +VW DD+QV D +K A+ S GC + I Sbjct: 111 TGIVWRDDAQVVDGGQKKRYAD-SCSAGCLVEI 142 >UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD7_PSEPG Length = 146 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 22/149 (14%) Query: 72 MFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSA 131 VPG+P +G P G + +A+ + IALA +AM A Sbjct: 9 FLVPGEPVGKGR---------PRIGKVGNHARMFTPQKTAS---YEGLIALAGTEAM--A 54 Query: 132 GLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-----VKRPDLDKLARAVLDGLTDVVW 186 G +L+ V + +P+ + A K+PD+D + +A+ DGL VVW Sbjct: 55 GRTLLEGAVMVEMRIVLAIPQSMSKKRKAMAIAGELFPTKKPDMDNVIKAIYDGLNGVVW 114 Query: 187 LDDSQVDDLHARKVLAELSQQPGCHMRIA 215 DD QV D RK E+ PG H+RI Sbjct: 115 KDDVQVVDAFVRKRYGEV---PGVHVRIV 140 >UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Y4_STRSW Length = 161 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 72/158 (45%), Gaps = 27/158 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM- 128 L + V G PAPQGSK+ R A L ESSAAV PWRE + A+ DA+ Sbjct: 6 LLLTVYGTPAPQGSKNR-------------NRAGA-LYESSAAVKPWREAVKTAALDALH 51 Query: 129 -----LSAGLPV-LDKKYPVRA-SLTFVMPRPSGTPKSYTPPA-VKRPDLDKLARAVLDG 180 + PV LD ++ +R + R +G K P PDLDKL R D Sbjct: 52 HDDGWTALSCPVWLDAQFTLRRPKHHYGTGRNAGRLKPSAPAYPTGTPDLDKLVRCTQDA 111 Query: 181 LTDV-VWLDDSQVDDLHARKVLA---ELSQQPGCHMRI 214 L D V DDS V L A KV + + PG +R+ Sbjct: 112 LKDAGVLADDSVVASLSASKVYVLWGDALRTPGAVIRV 149 >UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7B8_9ACTN Length = 125 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 139 KYPVRASLTFVMPRPSGTPK-SYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHA 197 + PV + P P PK + + P +PD D +A+ V+DG+ VVW DDSQV ++H Sbjct: 37 RVPVAVRIDVYEPLPKSRPKRTVSEPNTFKPDADNIAKLVMDGMNGVVWGDDSQVAEVHV 96 Query: 198 RKVLAELSQQPGCHMRIASPGWGDEA 223 K +P +++ GW D A Sbjct: 97 VKWPRRRGIEPHMDIQVYR-GWADPA 121 >UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6N6_9BACT Length = 154 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 18/114 (15%) Query: 116 WRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKR-------- 167 W+ RIA+A+ L+ P D PVR L F PRP ++ + R Sbjct: 43 WKSRIAVAAKS--LTPAQPYTD---PVRVRLHFFFPRPKAHFRTGKNAHLMRDDAPSYHI 97 Query: 168 --PDLDKLARAVLDGLTDV--VWLDDSQVDDLH-ARKVLAELSQQPGCHMRIAS 216 PD D LA+AVLD +T + W DD QV L + ++ + PG ++ ++ Sbjct: 98 AKPDCDNLAKAVLDAMTQLGGWWGDDQQVASLAVCKSYVSTIQLHPGVNISVSQ 151 >UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G3Y0_NOVAD Length = 135 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 15/140 (10%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVGP-----WRERIALASADAMLSAGLPVLDKKYP 141 M F G P G P +K + A P + IA A++ AM A P+ P Sbjct: 2 MEFSFTVPGVPVGKGRPRFVKATGRAYTPEKTASYESLIAYAASQAMRGA-QPI---NAP 57 Query: 142 VRASLTFVMPRPSGTPKSYTPPAV---KRPDLDKLARAVLDGLTDVVWLDDSQVDDLHAR 198 + + V P P+ K AV +PD D + +A+ D L +VW DDSQV Sbjct: 58 IGIKVQAVFPIPASWTKKRKESAVWHTSKPDGDNILKALGDALNGIVWADDSQVARTSIA 117 Query: 199 KVLAELSQQPGCHMRIASPG 218 KV ++ PG H+ + + G Sbjct: 118 KVYGDV---PGLHVFVEALG 134 >UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteobacteria RepID=C1D8H9_LARHH Length = 145 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 14/106 (13%) Query: 120 IALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV-------KRPDLDK 172 IAL++ AM G P++D PV SL + P+ K A+ K+PD D Sbjct: 43 IALSARQAM--GGRPLIDG--PVDVSLMIRLAVPASWSKKKQAAALAGQVLPTKKPDADN 98 Query: 173 LARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 + +AV DG+ VVW+DD Q + RK +Q PG + + G Sbjct: 99 VLKAVFDGMNGVVWVDDVQACGVMLRK---RYAQTPGVTVVVRQMG 141 >UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncultured marine microorganism HF4000_APKG7N23 RepID=B3TA02_9ZZZZ Length = 145 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 17/144 (11%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 +++ +PGKP QG F +G ++ ++ IA + A Sbjct: 2 RIKFTLPGKPVAQGRPRFY------------RKGNFVVATDPKPSKVYKADIAYIAQKAC 49 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP----PAVKRPDLDKLARAVLDGLTDV 184 AGL L + P+ + P P + P KRPD D +A++V DGL V Sbjct: 50 EEAGLDGLFEG-PLGIQILAYFPCPKSKWRVKNPRPEEHHSKRPDADNIAKSVKDGLNGV 108 Query: 185 VWLDDSQVDDLHARKVLAELSQQP 208 ++ DD Q+ +L RK +A + P Sbjct: 109 LYHDDGQISELIVRKRIAAQGEGP 132 >UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FRX1_PHATR Length = 386 Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 17/111 (15%) Query: 110 SAAVGPWRERIALASADAM-LSAGLPVLDKKYPVRASLTFVMPRPS-------------G 155 S V +R+ + L + ++AG+P + + ++ F M RP+ G Sbjct: 245 SHMVTGFRDELHLLKGTHLPIAAGVPFFPEGQALVMTILFSMKRPNNHFVANRRGMLEDG 304 Query: 156 TPKSYTPPAVKRP---DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAE 203 T P+V P D+D LA+ VLD +++ DD QV LH KVL E Sbjct: 305 CRLKATAPSVTSPTRTDVDNLAKFVLDSCNGLLYEDDRQVISLHVTKVLDE 355 >UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65KQ9_BACLD Length = 140 Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 8/79 (10%) Query: 141 PVRASLTFVMPRPSGTPKSYTPPAV-----KRPDLDKLARAVLDGLTDVVWLDDSQVDDL 195 P + F MP P K A+ K+PD+D L + V D L W DD+QV + Sbjct: 54 PTVVKVLFSMPIPKSWSKKKQQEAISTVHIKKPDIDNLVKGVFDALNKTAWHDDNQVFMV 113 Query: 196 HARKVLAELSQQPGCHMRI 214 KV ++PG ++I Sbjct: 114 IGAKVYG---KEPGIEVQI 129 >UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3R6_RUMGN Length = 136 Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Query: 166 KRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 K+PDLD +A+ +LDGL V + DD QV L KV S +P + IA Sbjct: 87 KKPDLDNIAKIILDGLNGVAYTDDKQVTSLEIEKV---YSDEPCVVVYIAE 134 >UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A4110 Length = 107 Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 44/89 (49%), Gaps = 10/89 (11%) Query: 129 LSAGLPVLDKKYP--VRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVW 186 ++A LP LD +Y + L FV +P K TP D+D A+ V+D LTD W Sbjct: 20 IAAALPKLDSQYTGELEVILEFVC-KPIAKSKFTTPMG----DVDNFAKGVMDTLTDEGW 74 Query: 187 L-DDSQVDDLHARKVLAELSQQPGCHMRI 214 DD Q+ L RK L + P H+RI Sbjct: 75 WEDDRQIMQLAVRKRFPALGEDP--HIRI 101 >UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A4JMI5_BURVG Length = 158 Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 30/156 (19%) Query: 66 GGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 G R++ VPGKP +G F+ RGP + + + + +A+ Sbjct: 14 GARRVVFVVPGKPVAKGRPRFV------------RRGPHVRTYTPEPTERYENLVKMAAR 61 Query: 126 DAMLSAGLPVLDKKY--PVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARA 176 +AM + + Y PVR + +P P+ + A K+PD D + +A Sbjct: 62 EAMRDS------EPYAGPVRLIVDIGVPIPASWSQRRQREAAAGVIGATKKPDADNVVKA 115 Query: 177 VLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHM 212 + DG+ VV+ DD QV DL K + PG + Sbjct: 116 LKDGMNGVVYGDDGQVVDLWVSK---RYATTPGVRI 148 >UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MNI2_ANATD Length = 124 Score = 42.4 bits (98), Expect = 0.014, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 25/34 (73%) Query: 167 RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 R D D +A+A+LDGL+ V ++DD QV DL RK+ Sbjct: 66 RADFDNIAKAILDGLSGVAFIDDRQVVDLRIRKL 99 >UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P3C6_9CLOT Length = 144 Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust. Identities = 17/38 (44%), Positives = 26/38 (68%) Query: 166 KRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAE 203 K+PD+D +A+++LD L + + DD+QV LH K AE Sbjct: 93 KKPDIDNIAKSILDALNKLAYRDDTQVVTLHMEKHYAE 130 >UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM18_PEDAC Length = 146 Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 57/142 (40%), Gaps = 26/142 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R+ VPG+P PQG F G RG + +++++A A D Sbjct: 2 IRIEVPGEPVPQGRPRFSG------------RGGFVRSYDPPKSREYKKKVAAAVKDQY- 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKS--------YTPPAVKRPDLDKLARAVLDGL 181 G PV Y V L+ P K + P VK D+D +AV D Sbjct: 49 -HGDPV---DYAVHVQLSIYRPIQKSLSKKEREMRLLGFHRPVVK-GDIDNYFKAVTDAC 103 Query: 182 TDVVWLDDSQVDDLHARKVLAE 203 T ++W+DD+Q+ K +E Sbjct: 104 TGLLWVDDAQIVSTKTNKYYSE 125 >UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WLT7_EGGLE Length = 141 Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 3/79 (3%) Query: 141 PVRASLTFVMPRPSGTPKSYT-PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARK 199 PV + P PK P PD+D +A+AVLDGL + + DD QV +LH K Sbjct: 61 PVSVRIDVFRVLPGSRPKRVLGEPDTMTPDIDNIAKAVLDGLNGIAYDDDKQVVELHVYK 120 Query: 200 VLAELSQQPGCHMRIASPG 218 + ++ G +RI+ G Sbjct: 121 --HDRERRVGDSVRISVEG 137 >UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Tax=Clostridium RepID=Q0TSJ9_CLOP1 Length = 128 Score = 41.2 bits (95), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 11/58 (18%) Query: 157 PKSYTPPAV-----------KRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAE 203 PKSYT V K+PD D + + +LD L V + DDSQ+ DL +K E Sbjct: 61 PKSYTKKRVQVIRDGLEKPTKKPDADNIGKVILDSLNGVAYKDDSQIIDLRIKKEYTE 118 >UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1J2_9PROT Length = 143 Score = 41.2 bits (95), Expect = 0.028, Method: Compositional matrix adjust. Identities = 14/40 (35%), Positives = 25/40 (62%) Query: 167 RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 +PD+D + + + D + ++VW DD QV DL K +E ++ Sbjct: 92 KPDMDNVVKGIFDAMNEIVWQDDKQVIDLSCYKRYSETAR 131 >UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillus jensenii SJ-7A-US RepID=D0DND1_9LACO Length = 135 Score = 40.8 bits (94), Expect = 0.038, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 24/36 (66%) Query: 168 PDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAE 203 PD D +A+AVLDG+ VV+ DD QV +L K AE Sbjct: 89 PDADNIAKAVLDGMNGVVYKDDKQVIELKVTKQYAE 124 >UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacterium longum subsp. infantis RepID=B7GQZ5_BIFLI Length = 142 Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 26/38 (68%) Query: 167 RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAEL 204 RPDLD L + VLD L V ++DD+QV + HA K + ++ Sbjct: 57 RPDLDNLLKLVLDSLNGVAYVDDAQVVESHACKRMPDM 94 >UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRE3_NITHX Length = 112 Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust. Identities = 15/32 (46%), Positives = 23/32 (71%) Query: 169 DLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 D+D + +A LD LT ++W DD Q+ +LHA K+ Sbjct: 66 DIDNVCKAALDSLTGILWKDDRQIQELHAYKL 97 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX0... 227 3e-58 UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJ... 156 5e-37 UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3... 149 8e-35 UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax... 134 3e-30 UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verruc... 133 6e-30 UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Ta... 131 2e-29 UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas p... 117 3e-25 UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobi... 111 1e-23 UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteoba... 106 9e-22 UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collins... 104 2e-21 UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Str... 104 2e-21 UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opituta... 101 2e-20 Sequences not found previously or not previously below threshold: UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncu... 88 2e-16 UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus lichenifo... 86 6e-16 UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A... 86 8e-16 UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas a... 86 1e-15 UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans ... 86 1e-15 UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli... 82 2e-14 UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminoc... 79 1e-13 UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia ... 74 3e-12 UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella l... 73 1e-11 UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidami... 71 3e-11 UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO 70 5e-11 UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter s... 70 6e-11 UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillu... 70 8e-11 UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN 69 2e-10 UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus Re... 68 3e-10 UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus ... 67 4e-10 UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales R... 67 4e-10 UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacte... 67 5e-10 UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 67 6e-10 UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4Z... 66 9e-10 UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7... 66 1e-09 UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospiri... 66 1e-09 UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacte... 66 1e-09 UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostri... 64 3e-09 UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea f... 64 3e-09 UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas s... 63 7e-09 UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornu... 63 7e-09 UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q... 63 8e-09 UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia... 63 9e-09 UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Ta... 63 1e-08 UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tric... 63 1e-08 UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9... 62 1e-08 UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collins... 61 2e-08 UniRef50_C0X7X1 Possible crossover junction endodeoxyribonucleas... 61 3e-08 UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Ta... 61 3e-08 UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus... 60 6e-08 UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Strepto... 60 8e-08 UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcu... 59 8e-08 UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomacu... 59 9e-08 UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q... 59 1e-07 UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteri... 59 1e-07 UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus ... 59 1e-07 UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A... 58 2e-07 UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacteri... 58 3e-07 UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetob... 57 5e-07 UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillu... 57 7e-07 UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium p... 56 1e-06 UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepI... 56 1e-06 UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteri... 55 2e-06 UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidob... 55 2e-06 UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD 55 2e-06 UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Ta... 55 2e-06 UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=... 55 2e-06 UniRef50_C2LH12 Endodeoxyribonuclease RusA n=1 Tax=Proteus mirab... 54 5e-06 UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Rumino... 54 6e-06 UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudona... 53 7e-06 UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB 52 2e-05 UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum ... 51 4e-05 UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA su... 49 9e-05 UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter h... 49 1e-04 UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes Re... 49 1e-04 UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=... 49 1e-04 UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2... 48 3e-04 UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=... 47 5e-04 UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermos... 46 7e-04 UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadace... 44 0.005 UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacterac... 43 0.006 UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synecho... 43 0.008 UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter f... 43 0.008 UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribo... 43 0.013 UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribo... 42 0.020 UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobac... 41 0.023 UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylo... 41 0.044 >UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX08_BPMT4 Length = 213 Score = 227 bits (578), Expect = 3e-58, Method: Composition-based stats. Identities = 133/193 (68%), Positives = 157/193 (81%), Gaps = 9/193 (4%) Query: 30 EHAKAAAAELLLDMVPAESYDVLYAALSARVTYERNGGRQLRMFVPGKPAPQGSKDFMGF 89 + AK AAA+ +L M+PA++++ L AL ARVT +RNG RQLR+FVPG+PAPQGSKDF GF Sbjct: 9 DEAKLAAADAVLAMLPADAHEALREALHARVTGDRNGSRQLRLFVPGRPAPQGSKDFKGF 68 Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 K G AILKESS AVGPWRER+ALA+A A+L+ GLPVL K++ + AS+TFV Sbjct: 69 SKT---------GKAILKESSDAVGPWRERVALAAASAILAEGLPVLAKEFSIAASVTFV 119 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG 209 MPRP+G PK TPPAVKRPDLDKLARA+LDGLTDVVW+DDSQV DLH RKVLAEL+Q PG Sbjct: 120 MPRPAGAPKRSTPPAVKRPDLDKLARAILDGLTDVVWIDDSQVVDLHCRKVLAELTQPPG 179 Query: 210 CHMRIASPGWGDE 222 H+RIASPGWGDE Sbjct: 180 AHIRIASPGWGDE 192 >UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJU5_9CAUD Length = 151 Score = 156 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 54/147 (36%), Positives = 81/147 (55%), Gaps = 7/147 (4%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ FVPG APQGSK+ + G ++++S + PWR + + + AM Sbjct: 2 EIDFFVPGLAAPQGSKNSYTIR----NKAGKVVGVNTVEQNSKTLRPWRADVKVFAQKAM 57 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPK-SYTPPAVKRPDLDKLARAVLDGLTDVVWL 187 G + D + FVM RPSGTPK TPPAVK+PDLDKL RA+ D L V+ Sbjct: 58 QERGQQICDD--AIYLHCDFVMKRPSGTPKTRRTPPAVKKPDLDKLIRAIGDALKGTVYT 115 Query: 188 DDSQVDDLHARKVLAELSQQPGCHMRI 214 +DS++ ++ A K +AE+ + PG + + Sbjct: 116 EDSRIVEIRATKRIAEIGETPGVFIHV 142 >UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3_9ACTO Length = 228 Score = 149 bits (375), Expect = 8e-35, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 82/163 (50%), Gaps = 15/163 (9%) Query: 62 YERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIA 121 Y N L V G P PQGSK +G+ ++ + +++ESS V PWR+++ Sbjct: 72 YPWNTHPALTATVHGLPGPQGSKTPIGYGRSRTTG----KTIPLMRESSTKVKPWRDKVQ 127 Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY-TPPAVKRPDLDKLARAVLDG 180 A+ A L P+ PV A +TF MP+P PK T PAV PD+DKL R+ D Sbjct: 128 -AAITAALHTSAPL---AGPVYAHITFTMPKPVRAPKRRRTYPAVT-PDIDKLERSTYDA 182 Query: 181 LTD-VVWLDDSQVDDLHARKVLAELS----QQPGCHMRIASPG 218 +T W DD V + HARKV + QPG +R+ + G Sbjct: 183 ITKAAAWKDDGCVIESHARKVYPDEHPDALDQPGALIRLYTLG 225 >UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F4F8 Length = 171 Score = 134 bits (336), Expect = 3e-30, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 13/162 (8%) Query: 62 YERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIA 121 Y+ + L + V G PQGSK +G+ ++ + + ++KESSA V PWR++++ Sbjct: 12 YDWDPVPALAIAVYGTAGPQGSKSPVGWGRSRKTG----KNIPLMKESSAKVKPWRDKVS 67 Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY-TPPAVKRPDLDKLARAVLDG 180 A A+L L V A +TF M +P PK T PAV PD+DKL RA D Sbjct: 68 AAITAAILRGDAKPLHG--AVYAEITFTMAKPGSRPKRRRTYPAVS-PDIDKLERATYDA 124 Query: 181 LTDV-VWLDDSQVDDLHARKVL----AELSQQPGCHMRIASP 217 +T W DD +V + H RKV + QPG +R+ + Sbjct: 125 ITTAKAWEDDGRVIENHNRKVYPGEHPDALDQPGAVIRLYTL 166 >UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C6C Length = 164 Score = 133 bits (333), Expect = 6e-30, Method: Composition-based stats. Identities = 51/157 (32%), Positives = 72/157 (45%), Gaps = 19/157 (12%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++L F+PG PAP GSK F+G K T+ ++ + WR + A+ + Sbjct: 2 NQRLSFFIPGVPAPGGSKRFVGIGK-------KTKRAILVDAAGQKNKDWRTAVGWAAHE 54 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGT--PKSYTPPA----VKRPDLDKLARAVLDG 180 L +R + TF MPRP G + P A + RPD KLAR+ D Sbjct: 55 HFKGEVL-----TGALRVTFTFFMPRPKGHHGKRGLLPSAPAFPITRPDALKLARSTEDA 109 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 LT +VW DD+QV D +K A+ S GC + I Sbjct: 110 LTGIVWRDDAQVVDGGQKKRYAD-SCSAGCLVEIEEL 145 >UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Tax=Corynebacterium jeikeium ATCC 43734 RepID=C8RQI5_CORJE Length = 143 Score = 131 bits (329), Expect = 2e-29, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 68/145 (46%), Gaps = 17/145 (11%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 L FVPG APQGSK+ +L ESS V PWR+ + S A Sbjct: 8 LTFFVPGIAAPQGSKNAY-----------RRGQKIVLVESSKKVKPWRDTV---SQVARF 53 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 P+ V ++ FVMPR PP V++PDLDK+ RAV D LT + + DD Sbjct: 54 VCKRPI---DGAVTVAVHFVMPRTKAMRDKPAPPMVQKPDLDKMLRAVNDALTGIAYADD 110 Query: 190 SQVDDLHARKVLAELSQQPGCHMRI 214 SQ+ L K A ++ G H+ I Sbjct: 111 SQIVRLTGSKRRAAPGEKTGAHITI 135 >UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD7_PSEPG Length = 146 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 22/153 (14%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + VPG+P +G P G + +A+ + IALA +AM Sbjct: 7 VSFLVPGEPVGKGR---------PRIGKVGNHARMFTPQKTAS---YEGLIALAGTEAM- 53 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-----VKRPDLDKLARAVLDGLTDV 184 AG +L+ V + +P+ + A K+PD+D + +A+ DGL V Sbjct: 54 -AGRTLLEGAVMVEMRIVLAIPQSMSKKRKAMAIAGELFPTKKPDMDNVIKAIYDGLNGV 112 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VW DD QV D RK E+ PG H+RI Sbjct: 113 VWKDDVQVVDAFVRKRYGEV---PGVHVRIVPL 142 >UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G3Y0_NOVAD Length = 135 Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 61/140 (43%), Gaps = 15/140 (10%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVGP-----WRERIALASADAMLSAGLPVLDKKYP 141 M F G P G P +K + A P + IA A++ AM A P+ P Sbjct: 2 MEFSFTVPGVPVGKGRPRFVKATGRAYTPEKTASYESLIAYAASQAMRGA-QPI---NAP 57 Query: 142 VRASLTFVMPRPSGTPKSYTPPAV---KRPDLDKLARAVLDGLTDVVWLDDSQVDDLHAR 198 + + V P P+ K AV +PD D + +A+ D L +VW DDSQV Sbjct: 58 IGIKVQAVFPIPASWTKKRKESAVWHTSKPDGDNILKALGDALNGIVWADDSQVARTSIA 117 Query: 199 KVLAELSQQPGCHMRIASPG 218 KV ++ PG H+ + + G Sbjct: 118 KVYGDV---PGLHVFVEALG 134 >UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteobacteria RepID=C1D8H9_LARHH Length = 145 Score = 106 bits (263), Expect = 9e-22, Method: Composition-based stats. Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 25/156 (16%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R VPG P +G + + G E +A+ + IAL++ AM Sbjct: 4 VRFEVPGTPVGKG--------RPKVSTRGGKFARMYTPEKTAS---YEGLIALSARQAM- 51 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLT 182 G P++D PV SL + P+ K A K+PD D + +AV DG+ Sbjct: 52 -GGRPLIDG--PVDVSLMIRLAVPASWSKKKQAAALAGQVLPTKKPDADNVLKAVFDGMN 108 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 VVW+DD Q + RK A Q PG + + G Sbjct: 109 GVVWVDDVQACGVMLRKRYA---QTPGVTVVVRQMG 141 >UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7B8_9ACTN Length = 125 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 8/113 (7%) Query: 117 RERIALASADAMLSAGLPVLDK-----KYPVRASLTFVMPRPSGTPKS-YTPPAVKRPDL 170 I A+ DAM A P L+ + PV + P P PK + P +PD Sbjct: 11 EAAIRDAALDAMREA-YPELEGLLFPFRVPVAVRIDVYEPLPKSRPKRTVSEPNTFKPDA 69 Query: 171 DKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEA 223 D +A+ V+DG+ VVW DDSQV ++H K +P +++ GW D A Sbjct: 70 DNIAKLVMDGMNGVVWGDDSQVAEVHVVKWPRRRGIEPHMDIQVYR-GWADPA 121 >UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Y4_STRSW Length = 161 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 55/165 (33%), Positives = 70/165 (42%), Gaps = 27/165 (16%) Query: 66 GGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 L + V G PAPQGSK+ L ESSAAV PWRE + A+ Sbjct: 2 TAPALLLTVYGTPAPQGSKNR--------------NRAGALYESSAAVKPWREAVKTAAL 47 Query: 126 DAM------LSAGLPV-LDKKYPVRA-SLTFVMPRPSGTPKSYTPPA-VKRPDLDKLARA 176 DA+ + PV LD ++ +R + R +G K P PDLDKL R Sbjct: 48 DALHHDDGWTALSCPVWLDAQFTLRRPKHHYGTGRNAGRLKPSAPAYPTGTPDLDKLVRC 107 Query: 177 VLDGLTDV-VWLDDSQVDDLHARKVL---AELSQQPGCHMRIASP 217 D L D V DDS V L A KV + + PG +R+ Sbjct: 108 TQDALKDAGVLADDSVVASLSASKVYVLWGDALRTPGAVIRVWRL 152 >UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6N6_9BACT Length = 154 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 26/163 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + + FV G P+G F + G + A + ++ A G W+ RIA+A+ Sbjct: 2 NKPIVFFVSGD--PKGQPRPRAFAR-----RVGNKFVARVFDAGTAEG-WKSRIAVAAKS 53 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK----------RPDLDKLARA 176 L+ P D PVR L F PRP ++ + +PD D LA+A Sbjct: 54 --LTPAQPYTD---PVRVRLHFFFPRPKAHFRTGKNAHLMRDDAPSYHIAKPDCDNLAKA 108 Query: 177 VLDGLT--DVVWLDDSQVDDLH-ARKVLAELSQQPGCHMRIAS 216 VLD +T W DD QV L + ++ + PG ++ ++ Sbjct: 109 VLDAMTQLGGWWGDDQQVASLAVCKSYVSTIQLHPGVNISVSQ 151 >UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncultured marine microorganism HF4000_APKG7N23 RepID=B3TA02_9ZZZZ Length = 145 Score = 88.3 bits (217), Expect = 2e-16, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 17/153 (11%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 +++ +PGKP QG F +G ++ ++ IA + A Sbjct: 2 RIKFTLPGKPVAQGRPRFY------------RKGNFVVATDPKPSKVYKADIAYIAQKAC 49 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPK----SYTPPAVKRPDLDKLARAVLDGLTDV 184 AGL L + P+ + P P + KRPD D +A++V DGL V Sbjct: 50 EEAGLDGL-FEGPLGIQILAYFPCPKSKWRVKNPRPEEHHSKRPDADNIAKSVKDGLNGV 108 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 ++ DD Q+ +L RK +A + P + + Sbjct: 109 LYHDDGQISELIVRKRIAAQGEGPRIEVELYKM 141 >UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65KQ9_BACLD Length = 140 Score = 86.4 bits (212), Expect = 6e-16, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 12/127 (9%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P G+ T + +++ +++ I L + M L P + F MP Sbjct: 10 PMGAVRMTGRGKFVNKNAQRYLAYKDFIKLHAQKQMKGQQL----YTGPTVVKVLFSMPI 65 Query: 153 PSGTPKSYTPPAV-----KRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQ 207 P K A+ K+PD+D L + V D L W DD+QV + KV ++ Sbjct: 66 PKSWSKKKQQEAISTVHIKKPDIDNLVKGVFDALNKTAWHDDNQVFMVIGAKVY---GKE 122 Query: 208 PGCHMRI 214 PG ++I Sbjct: 123 PGIEVQI 129 >UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A4JMI5_BURVG Length = 158 Score = 86.4 bits (212), Expect = 8e-16, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 26/159 (16%) Query: 66 GGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 G R++ VPGKP +G F+ G E + + + +A+ Sbjct: 14 GARRVVFVVPGKPVAKGRPRFV---------RRGPHVRTYTPEPTER---YENLVKMAAR 61 Query: 126 DAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVL 178 +AM P PVR + +P P+ + A K+PD D + +A+ Sbjct: 62 EAMRD-SEPY---AGPVRLIVDIGVPIPASWSQRRQREAAAGVIGATKKPDADNVVKALK 117 Query: 179 DGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 DG+ VV+ DD QV DL K A PG + Sbjct: 118 DGMNGVVYGDDGQVVDLWVSKRYAT---TPGVRIEAIEL 153 >UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas aeruginosa RepID=A6V3Y0_PSEA7 Length = 149 Score = 85.6 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 37/157 (23%), Positives = 55/157 (35%), Gaps = 26/157 (16%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADA 127 R + VPG+P +G P G + A + +A+A+ +A Sbjct: 5 RPVVFTVPGEPVGKGR---------PRIGRVGAHARMFTPAKTVA---YEGLVAMAAQEA 52 Query: 128 MLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDG 180 + L PV L P P K A + D D +AV D Sbjct: 53 LAGRSL----IAGPVLIELRMFHPIPRSWSKKRQAMALVGEVMPTVKCDADNCLKAVCDA 108 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L V W DD+QV ++ K AE+ P ++I Sbjct: 109 LNGVAWKDDTQVVNVMLAKRYAEV---PRVEVKIVPL 142 >UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1J2_9PROT Length = 143 Score = 85.6 bits (210), Expect = 1e-15, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 22/154 (14%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + VPG P +G F RG + + + + LA+A AM Sbjct: 4 ITFTVPGTPVGKGRPKF------------ARRGKFVTTYTPEKTASYENLVKLAAAKAM- 50 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-----VKRPDLDKLARAVLDGLTDV 184 G +D V L P K A +PD+D + + + D + ++ Sbjct: 51 -DGRQPIDGAAQVSIWLWVTPPASWSQKKQRQALAHEIFPTTKPDMDNVVKGIFDAMNEI 109 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 VW DD QV DL K +E ++ ++I G Sbjct: 110 VWQDDKQVIDLSCYKRYSETAR---AEVKITQIG 140 >UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli RepID=A8U815_9LACT Length = 145 Score = 81.8 bits (200), Expect = 2e-14, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 27/157 (17%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++++ VPG+P PQG P+ + G A + S + + AM Sbjct: 2 EIKITVPGQPVPQGR---------PKFTTIGGHARAYDPKKSVDYK------RIVAYHAM 46 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGL 181 +L+ + + + K A V +PD D A+ LD + Sbjct: 47 QHKPKQLLEGE--LEVEILIYKECLKSFSKRNMELAEIGQLRPVTKPDADNYAKGPLDAM 104 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 ++W DD Q+ DL ARK + +P + + + G Sbjct: 105 KGIIWKDDGQIVDLIARKYYSS---KPRIEITVRTLG 138 >UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3R6_RUMGN Length = 136 Score = 79.1 bits (193), Expect = 1e-13, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 27/154 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + + +PGKP + F P + + +A ++ Sbjct: 1 MVITIPGKPVGKARPRFRRAGFKVITYTPP------------ENKKYEKEVARIYKQSIG 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK-------RPDLDKLARAVLDGLT 182 VL P+R + P P K A+K +PDLD +A+ +LDGL Sbjct: 49 -----VLYTDIPLRVRILAKFPIPESWSKKNKEKALKGEIKPNKKPDLDNIAKIILDGLN 103 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V + DD QV L KV ++ +P + IA Sbjct: 104 GVAYTDDKQVTSLEIEKVYSD---EPCVVVYIAE 134 >UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JU78_BURP8 Length = 180 Score = 74.5 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 55/151 (36%), Gaps = 21/151 (13%) Query: 77 KPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESS---AAVGPWRERIALASADAMLSAGL 133 PAP EG P G + + + + + + AM A Sbjct: 16 TPAP----ATYRVSFTVEGVPVGKARARVTRNGTYTPKKTRRYEHDVRTVAMQAM-GALR 70 Query: 134 PVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLTDVVW 186 P D V SL +P P K+ A V RPDLD +AV D L VV+ Sbjct: 71 PCRD---AVHVSLVVFLPVPERFSKAKRAAALAGLVYPVVRPDLDNFEKAVTDALNGVVY 127 Query: 187 LDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 DDSQ+ D+ K ++ P + AS Sbjct: 128 HDDSQICDVVKSKRYSDR---PRVVIECASI 155 >UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WLT7_EGGLE Length = 141 Score = 72.6 bits (176), Expect = 1e-11, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 3/81 (3%) Query: 139 KYPVRASLTFVMPRPSGTPKSYT-PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHA 197 + PV + P PK P PD+D +A+AVLDGL + + DD QV +LH Sbjct: 59 EGPVSVRIDVFRVLPGSRPKRVLGEPDTMTPDIDNIAKAVLDGLNGIAYDDDKQVVELHV 118 Query: 198 RKVLAELSQQPGCHMRIASPG 218 K + ++ G +RI+ G Sbjct: 119 YKH--DRERRVGDSVRISVEG 137 >UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9K9_9FIRM Length = 135 Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 46/141 (32%), Gaps = 28/141 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + V G P +G F G + + I A L Sbjct: 2 IEFCVFGDPRGKGRPRFRGHAYTD-----------------SKTRAYERMI----QGAFL 40 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLARAVLDGLT 182 +G + +K PV + P+ K +K+PD D + + V D L Sbjct: 41 QSGESMFPEKVPVGVEVECYFRIPTSYSKRRKGLCRENLELPLKKPDGDNVLKIVCDALN 100 Query: 183 DVVWLDDSQVDDLHARKVLAE 203 + + DD+QV D+ RK Sbjct: 101 GLAYKDDTQVSDMIIRKRYGR 121 >UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO Length = 139 Score = 70.2 bits (170), Expect = 5e-11, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 23/153 (15%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + +PGKP QG F + + S A+A+ A Sbjct: 3 IEFTIPGKPVGQGRPRFSRHRGYVQTYD---------PAKSRQYK------AIATMCAQR 47 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKS-----YTPPAVKRPDLDKLARAVLDGLTDV 184 L+ + F + + + K+PD+D + + ++D L V Sbjct: 48 VYSGEPLETPLKITVKAYFGLYKSYTNKRREACLSGQEVPTKKPDIDNIVKGIMDSLNGV 107 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 ++ DD QV L A K AE +P + + Sbjct: 108 IYHDDKQVIQLVAFKAYAE---KPRVEVTVEEL 137 >UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter sphaeroides ATCC 17029 RepID=A3PHF9_RHOS1 Length = 144 Score = 70.2 bits (170), Expect = 6e-11, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 13/151 (8%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 G P + + + A P + ++ S ++ + PV + Sbjct: 2 VSFVIPGKPFAKQRHNFSRATGRAFTP-KATVSFESTVRDIALPKFPRPLEGPVSIRIEA 60 Query: 149 VMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAE 203 PK P ++PDLD + +++LDGL + + DDSQV + K Sbjct: 61 TFVPAPSWPKKRRLACLGQPHTQKPDLDNVEKSILDGLNRIAFADDSQVARVVKEKRWGP 120 Query: 204 LSQQPGCHMRIASPGWGDEAIAAWQAANGGA 234 ++Q + + G + +WQAA A Sbjct: 121 VAQT---VVVVEPLG----PLPSWQAAEAVA 144 >UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillus jensenii SJ-7A-US RepID=D0DND1_9LACO Length = 135 Score = 69.9 bits (169), Expect = 8e-11, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 16/141 (11%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVGP-----WRERIALASADAMLSAGLPVLDKKYP 141 M + +G P G P + P + ++A +++ A LD Sbjct: 1 MEISFSIDGKPFGKERPRPNRTGHGVYTPERTKMYEYKVAQSASLAFFDE---PLDSDIR 57 Query: 142 VRASLTFVMPRPSGTPKSYTPPA-----VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLH 196 V S F + + K + + PD D +A+AVLDG+ VV+ DD QV +L Sbjct: 58 VCISAYFGVAKSDSKRKKQAKISGEIRPARTPDADNIAKAVLDGMNGVVYKDDKQVIELK 117 Query: 197 ARKVLAELSQQPGCHMRIASP 217 K AE +P + + Sbjct: 118 VTKQYAE---KPRVDVSVEEI 135 >UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN Length = 145 Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 24/145 (16%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ + P PQ F + P ++++IA + M Sbjct: 2 IKFTINIPPHPQERPRFRNAGNFVQTYDPP------------KSKEYKKKIANVAK--MY 47 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK-------RPDLDKLARAVLDGLT 182 + G P+ P++ L F + P K++ A+ RPD+D +A+LD L Sbjct: 48 APGTPI---STPIQIKLIFFVSIPKSKSKAWKQRALLGQEFPSVRPDIDNYVKAILDALN 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQ 207 +++ DD ++ +L A K ++L + Sbjct: 105 GIMFSDDGKIVELIAYKRYSDLPRT 129 >UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus RepID=YQAN_BACSU Length = 142 Score = 67.5 bits (163), Expect = 3e-10, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 54/156 (34%), Gaps = 29/156 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ V G+P QG + + R P A +++ +AL ++ Sbjct: 4 IKFTVYGEPVAQGRP-----RGSIRNGKVHMRDP-------AKSKYFKQYVALVASQH-- 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA---------VKRPDLDKLARAVLDG 180 P PV + P P S +PD+D + V D Sbjct: 50 ---RPETIITGPVSMDVKVYRPMPKSVSNSKKKKEKAEKGLLRPTTKPDVDNYVKGVKDA 106 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 L +++ DDSQV DL K +E +P + I Sbjct: 107 LNHLIYKDDSQVVDLKVSKFYSE---EPRVEVMIRE 139 >UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM18_PEDAC Length = 146 Score = 67.2 bits (162), Expect = 4e-10, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 27/152 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R+ VPG+P PQG F G G + P +++++A A D Sbjct: 2 IRIEVPGEPVPQGRPRFSG-----RGGFVRSYDPP-------KSREYKKKVAAAVKD--Q 47 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLT 182 G PV Y V L+ P K V + D+D +AV D T Sbjct: 48 YHGDPV---DYAVHVQLSIYRPIQKSLSKKEREMRLLGFHRPVVKGDIDNYFKAVTDACT 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRI 214 ++W+DD+Q+ K +E P M + Sbjct: 105 GLLWVDDAQIVSTKTNKYYSE---DPHVEMLV 133 >UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales RepID=B1M2L8_METRJ Length = 152 Score = 67.2 bits (162), Expect = 4e-10, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 23/158 (14%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 L + +PG P +G + I + + LA+ Sbjct: 2 SETLIIRLPGAPRGKGRHRAQLVHRG--------GVARIHSHPDQKTEAYESALRLAAGA 53 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLD 179 M L P+ + MP P+ K A +PD D +A+ V D Sbjct: 54 VMRGRAL----LTGPLEVRIFATMPIPASWSKRKRLDAIERRLRPTTKPDWDNIAK-VSD 108 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L VVW DD+ V D RK E P +++ + Sbjct: 109 ALNHVVWADDASVVDGLVRKFYGE---TPELVIQVTAL 143 >UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZCC2_EUBR3 Length = 149 Score = 67.2 bits (162), Expect = 5e-10, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 50/158 (31%), Gaps = 25/158 (15%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADA 127 +Q+R +PG+P + F + P + + L +A Sbjct: 6 KQIRFTIPGQPFGKQRPKFSRAGAYVKTYTP------------KETTSYENLVKLFYNEA 53 Query: 128 MLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDG 180 P + + + P T K K+PD D + + V D Sbjct: 54 AKGKMFP---EGAMLDVRIIAYYEIPKSTSKKKRREMLEHRIRPTKKPDWDNIGKIVCDS 110 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 L V + DDS V D RK +E P + I G Sbjct: 111 LNLVAYHDDSAVVDAQVRKFYSE---TPRIDVMIKVVG 145 >UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 Length = 139 Score = 66.8 bits (161), Expect = 6e-10, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 14/128 (10%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGP-----WRERIALASADAMLSAGLPVLDKKY 140 M G P G P + P + E I + + Sbjct: 4 SMKVNFTIYGEPVGKERPRFNLATKRTYTPNKTKSYEELIKWLYQSKVKH----YFEGYI 59 Query: 141 PVRASLTFVMPRPSGTPKSYTPPA-----VKRPDLDKLARAVLDGLTDVVWLDDSQVDDL 195 + + + + + K+PD+D + + V D L + + DD+Q+ ++ Sbjct: 60 KMTLRCYYSIAKSNSKKIKEQKRNNVLRPSKKPDIDNVIKVVADSLNGIAYKDDTQIVEV 119 Query: 196 HARKVLAE 203 A K ++ Sbjct: 120 VASKYYSD 127 >UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4ZC15_9CAUD Length = 138 Score = 66.0 bits (159), Expect = 9e-10, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 5/88 (5%) Query: 125 ADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-----PAVKRPDLDKLARAVLD 179 ++ LP L P+R ++ F PK P +PD+D L + +LD Sbjct: 43 HKKFVADQLPHLMIDKPIRLTVEFYFKPSKSWPKYKKEACIGNPHTIKPDIDNLLKTILD 102 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQ 207 +++W+DD+ + ++ K AE ++ Sbjct: 103 AGNNLLWVDDTLIYEIRTFKKYAETART 130 >UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7_STAAE Length = 135 Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 10/126 (7%) Query: 96 SPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG 155 +P G+ P + + V + A + A + +P L+ + ++ L F P Sbjct: 13 APMGSPRPRF-RNTGRFVQTYMPT-AYTNHKAYIQGQMPKLNLERALKIELDFYFPLLKS 70 Query: 156 TPKSYTPPAV-----KRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGC 210 K V +PD+D L + VLD VW DD+Q+ ++ + K +P Sbjct: 71 WSKKKKSEMVGQYKVTKPDIDNLIKTVLDACNGHVWKDDNQITEITSSKRY---GLEPKI 127 Query: 211 HMRIAS 216 MR+ Sbjct: 128 IMRVEE 133 >UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Y8_MAGSA Length = 134 Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 18/129 (13%) Query: 92 APEGSPPGTRGPAILKESSAAVGPWRER-----IALASADAMLSAGLPVLDKKYPVRASL 146 G G P I + AV P + R IA + DAM PV ++ Sbjct: 6 TIPGEVTGKGRPRIW--NGRAVTPAKTRSKEGVIASLAMDAMGGCD----PLTGPVLVTI 59 Query: 147 TFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARK 199 V+P + K A K+PDLD + + VLD + +V+ DD+Q+ + A K Sbjct: 60 EAVLPVATSWSKKRRAAALDGTEQPTKKPDLDNVVKLVLDAVNGIVFADDAQITHIIASK 119 Query: 200 VLAELSQQP 208 +Q Sbjct: 120 RYGVFAQTT 128 >UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCV3_9FIRM Length = 143 Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 47/143 (32%), Gaps = 25/143 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 VPGKP + + P+ + G + + + + AM Sbjct: 4 FSFTVPGKPFGK---------QRPKATRRGVHASVYTPKETVN---YENLV-----VAMF 46 Query: 130 SAGLPVLDK-KYPVRASLTFVMPRPSGTPKSYTPPAVK-------RPDLDKLARAVLDGL 181 P+ VR ++ P K + +PDLD + + + D L Sbjct: 47 KQKYPLDKPIDGEVRGTIRAFYQIPQSKSKKVKERMLNGEIKPMVKPDLDNIQKVIYDAL 106 Query: 182 TDVVWLDDSQVDDLHARKVLAEL 204 + + DDS + + K +++ Sbjct: 107 NGIAYTDDSHIIAMRCAKFYSDV 129 >UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P3C6_9CLOT Length = 144 Score = 64.5 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 58/155 (37%), Gaps = 24/155 (15%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R VPG AP+G + G+ T +L E+ I Sbjct: 4 VRFTVPG--APKGKARAKTVRSKKGGTFSYTPEGTMLYEN---------LIKCCYRQ--- 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLT 182 + + + P++ ++ P T K K+PD+D +A+++LD L Sbjct: 50 ESNNIIFNDGQPLKVTIIAYYPIVKSTSKKKKQQMLEDLMFPTKKPDIDNIAKSILDALN 109 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 + + DD+QV LH K AE P + I Sbjct: 110 KLAYRDDTQVVTLHMEKHYAE---DPRVEVEIEEI 141 >UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G1B4_9FIRM Length = 155 Score = 64.5 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 27/162 (16%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 R G + + VPGKP + K G + P ++ + Sbjct: 9 RAGMQSVTFQVPGKPQGKAR------AKTVRNKSTGNIH---------SYTPEKDMLYEN 53 Query: 124 SADAMLSAGLP--VLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLA 174 A L++ PV + P K +K+PD+D + Sbjct: 54 YIKAQFQNRANGFYLERGKPVMLRIIARFLPPKSVSKKRQLDMLEGRELPLKKPDIDNIV 113 Query: 175 RAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 + V D L V + DD+Q+ + A K + + G + + Sbjct: 114 KVVADALNGVAYHDDTQIAMVIAAKTYSAME---GLDITVEE 152 >UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LU68_9FIRM Length = 140 Score = 62.9 bits (151), Expect = 7e-09, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 47/142 (33%), Gaps = 25/142 (17%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 V G P QG F + +G P A ++ + + +A Sbjct: 5 TAVVLGDPVAQGRPRF-----SRQGGFVKAYDP-------AKSRDYKSYVRMIAAQH--- 49 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLTD 183 PV + + SL P G PK A V +PD+ + + V D L Sbjct: 50 --APVTPVEGAIEFSLRIYRAIPKGMPKYKREAAKEGRLRPVTKPDVSNVLKGVEDALKG 107 Query: 184 VVWLDDSQVDDLHA-RKVLAEL 204 V + DDSQ+ K E Sbjct: 108 VWYKDDSQIVGYGVLGKWYDER 129 >UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S400_PHATR Length = 157 Score = 62.9 bits (151), Expect = 7e-09, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 33/164 (20%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 R+ GR + +++ GKP P + +P LKE S + Sbjct: 10 RDTGRPIDVYIEGKPIPMPRPR---LGRGIWFNP----ATRQLKEFSKKL---------- 52 Query: 124 SADAMLSAGLPVLDKKYPVRASLTFVMPRPSG-----------TPKSYTPPAVKRPDLDK 172 A+L V + + +L F + RP+ P P +PD+D Sbjct: 53 --QALLPEDGVVFPRGECLEVNLFFYIRRPNSDYDGNKRINALKPGRANPFETVKPDIDN 110 Query: 173 LARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 LA+ LD + +V+ DDSQV L K+ G +++ + Sbjct: 111 LAKFTLDAMQGIVFHDDSQVVKLLVYKLRGNEG---GTRIKVRT 151 >UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q044S5_LACGA Length = 153 Score = 62.9 bits (151), Expect = 8e-09, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 47/148 (31%), Gaps = 30/148 (20%) Query: 92 APEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMP 151 P R + + A + + + + ++ + DK P+ + Sbjct: 9 GPPIGKARPRVTRTVTYTPAKTARYEDLVRYTAINSFKG----IFDKDEPLDVKIMAYFE 64 Query: 152 RPSGTPKSYT-------PPAVKRPDLDKLARAVLDGLT----------------DVVWLD 188 P K K+PD D + + ++DG+ V+ D Sbjct: 65 VPKSLSKKRKALCLANQELPTKKPDADNVGKIIMDGMNPKMRRDKRLHKMVEVMRGVYHD 124 Query: 189 DSQVDDLHARKVLAELSQQPGCHMRIAS 216 D QV L +K AE ++ +RI Sbjct: 125 DKQVTTLLVKKRYAERAR---VDVRIKR 149 >UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia pseudomallei Pasteur 52237 RepID=A8HKV5_BURPS Length = 166 Score = 62.9 bits (151), Expect = 9e-09, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 11/119 (9%) Query: 95 GSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPS 154 R + + + ++A + AM L P+R + + P Sbjct: 14 IGKGRPRVYRGIASTPPKTRAYEHQVATLARAAMRGR----LPFDGPIRVLIEIDVEIPK 69 Query: 155 GTPKSYTPPAVK-------RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 PK A+ +PD+D A+A+LDG+ + + DD+Q+ K A +Q Sbjct: 70 TWPKYRRADALAGRVWPSVKPDIDNCAKAILDGMNGIAYRDDTQIVIALLSKRYASDAQ 128 >UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Tax=Clostridium RepID=Q0TSJ9_CLOP1 Length = 128 Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 7/75 (9%) Query: 139 KYPVRASLTFVMPRPSGTPKSY-------TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQ 191 + ++A + P K K+PD D + + +LD L V + DDSQ Sbjct: 47 EGAIKALIIAYYKIPKSYTKKRVQVIRDGLEKPTKKPDADNIGKVILDSLNGVAYKDDSQ 106 Query: 192 VDDLHARKVLAELSQ 206 + DL +K E + Sbjct: 107 IIDLRIKKEYTEELE 121 >UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FRX1_PHATR Length = 386 Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 22/159 (13%) Query: 65 NGGRQLRMFVPGKPAP-QGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 N ++ V G P P + + GF P + + S V +R+ + L Sbjct: 203 NVTGRVAFTVRGNPLPLRRHRTARGFVYNPSAKAQESFRDIV----SHMVTGFRDELHLL 258 Query: 124 SADAM-LSAGLPVLDKKYPVRASLTFVMPRPSGT-------------PKSYTPPAVKRP- 168 + ++AG+P + + ++ F M RP+ T P+V P Sbjct: 259 KGTHLPIAAGVPFFPEGQALVMTILFSMKRPNNHFVANRRGMLEDGCRLKATAPSVTSPT 318 Query: 169 --DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELS 205 D+D LA+ VLD +++ DD QV LH KVL E Sbjct: 319 RTDVDNLAKFVLDSCNGLLYEDDRQVISLHVTKVLDEQG 357 >UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9_CLOBH Length = 133 Score = 62.2 bits (149), Expect = 1e-08, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 13/119 (10%) Query: 95 GSPPGTRGPAILKESSAAVGP-----WRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 G P G + P ++ P + + L L + + +V Sbjct: 7 GKPMGKQRPRFNSKTGNTYTPDKTVNYENWVKLCYQQQCKGEK---LTGEVVAFINAYYV 63 Query: 150 MPRPSGTPKSYTPPA-----VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAE 203 +P+ + A +PD+D +A+ +LD L + + DD Q+ K E Sbjct: 64 IPKSTSKKNKKDMLAGIIRPTIKPDVDNIAKVILDSLNGLAYKDDKQIVFCAISKWYGE 122 >UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8E1_9ACTN Length = 152 Score = 61.4 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 4/117 (3%) Query: 94 EGSPPGTRGPAILKESSAAVGPWRERIALASA--DAMLSAGLPVLDKKYPVRASLTFVMP 151 G P + S P + + A + + + +G + PV + + Sbjct: 17 PAEIVGKGRPRFTR-SGRTYTPRKTKRAELAIRDEFLRVSGDRWAKFRGPVSVHIIYGRE 75 Query: 152 RPSGTPKSYTPPA-VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQ 207 PK + A +PDLD + VLD L + ++DDSQV ++ K Sbjct: 76 LAKSNPKFWAGRADTGKPDLDNCGKLVLDALNGIAFMDDSQVVNMTIAKSARRPGGT 132 >UniRef50_C0X7X1 Possible crossover junction endodeoxyribonuclease RusA n=37 Tax=root RepID=C0X7X1_ENTFA Length = 144 Score = 61.4 bits (147), Expect = 3e-08, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 26/149 (17%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADA 127 ++R+ +P +P PQ F A G+ T + ++ V + Sbjct: 2 EEMRIILPIEPKPQSRPRF-----ARRGNYVQTYEDSAMRAYKQKVKVY----------- 45 Query: 128 MLSAGLPVLDKKYPVRASLTFVMPRPSGT---PKSYTPPAV------KRPDLDKLARAVL 178 L P L +K P+ A +TF + P + + K+PDLD +AV Sbjct: 46 -LRKAKPKLIEKGPIMAHVTFYVQAPKSALSNKQKRLDVKLERKYCDKKPDLDNYFKAVT 104 Query: 179 DGLTDVVWLDDSQVDDLHARKVLAELSQQ 207 D +++ +D Q+ + +K+ + + Sbjct: 105 DAAEGILYKNDGQIAVMVCQKLYSMRQRT 133 >UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Tax=Lactobacillaceae RepID=C7TBL4_LACRG Length = 113 Score = 61.0 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 16/114 (14%) Query: 111 AAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG-------TPKSYTPP 163 +++ + +++ L + P+R S+ K Sbjct: 8 TKSRNYKQHVKSVASE------LNIEPLSGPIRVSMEIYRQLQKSGSKALIRRKKEGKVR 61 Query: 164 AVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 +PD+D ++V D LT ++W DD+Q+ ++H K ++ QP + Sbjct: 62 PTVKPDVDNYYKSVSDALTGILWEDDNQIVEIHVGKWYSD---QPRVEIEAEEI 112 >UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus RepID=B3XS14_LACRE Length = 149 Score = 60.2 bits (144), Expect = 6e-08, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 10/86 (11%) Query: 139 KYPVRASLTFVMPRPSGTPKSYTPPAVK-------RPDLDKLARAVLDGLTDVVWLDDSQ 191 P+ SL F S T K + +PD D ++ LDGL ++W DD+Q Sbjct: 53 DGPLIVSLKFYRHIQSSTSKKERELRITGAHRPVVKPDTDNYIKSTLDGLNGLLWEDDNQ 112 Query: 192 VDDLHARKVLAELSQQPGCHMRIASP 217 + + A K ++ P + + Sbjct: 113 IVKIVAEKYYSDR---PRIEIEVERL 135 >UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Streptococcus phage M102 RepID=A7DYE2_9CAUD Length = 145 Score = 59.8 bits (143), Expect = 8e-08, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 13/110 (11%) Query: 102 GPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT 161 G ++ + WR + + +A + L + P++ +TF + P Sbjct: 24 GRGVVAYEKKEMRVWRAKCSELIEEAFRAEEL----MEGPLKIDVTFYILPPKYISSKKK 79 Query: 162 PPAV---------KRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLA 202 K+PD+D +A+LD +T V++ DD QV + ARK+ + Sbjct: 80 LKEKLEAEEIFCDKKPDVDNYLKALLDSMTGVIFKDDGQVVECRARKLYS 129 >UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcus pneumoniae RepID=C1CGH5_STRZJ Length = 143 Score = 59.5 bits (142), Expect = 8e-08, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 47/142 (33%), Gaps = 13/142 (9%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILKESSAA-VGPWRERIALASADAMLSAGLPVLDKKYPV 142 K + + P+ P R + + WR L A G P+L+ Sbjct: 2 KLTLNIEPKPQSRPRFARRGSFTTTYEDKDMKTWRNHCQLLI--ANQYMGQPILEGALRT 59 Query: 143 RASLTFVMPRPSGTPKSYTPPAV-------KRPDLDKLARAVLDGLTDVVWLDDSQVDDL 195 R P+ K + K+PD+D +A+ D ++ +V+ DD Q+ Sbjct: 60 RLRFYIKPPQYISKVKKNQQALLDEIIPVGKKPDIDNYEKALYDSMSGIVFQDDGQIALH 119 Query: 196 HARKVLAELSQQPGCHMRIASP 217 K S P + I Sbjct: 120 DVGKFY---SLNPRIEVEIEVM 138 >UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1U6_DESRM Length = 114 Score = 59.5 bits (142), Expect = 9e-08, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 47/149 (31%), Gaps = 37/149 (24%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + VPG+P P+ G G ++ + + L +++ Sbjct: 1 MHFTVPGRPVPKYRPR------------VGKHGNIYTPQN---CREYERTVGLYASNVF- 44 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 P+ PV + F R G DLD +A+ DGL + W DD Sbjct: 45 --PQPLT---GPVTLGVKFYFSRRPG-------------DLDNYVKAISDGLNGIAWQDD 86 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIASPG 218 QV L A + + + G Sbjct: 87 RQVVKLFASLKRGSPER---AEVVVQRIG 112 >UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q03G49_PEDPA Length = 139 Score = 59.5 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 27/152 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R+ V G+P PQG F G G + P +++ + Sbjct: 2 IRIEVAGEPVPQGRPRFSG-----RGGFVRSYDPP-------KSKEYKKHVKEEVQQ--Q 47 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV---KRP----DLDKLARAVLDGLT 182 G P+ + + L+ P K + RP D+D +AV D T Sbjct: 48 YHGKPL---EGQLLVELSVYRPIQKSISKKERDMRLLGFHRPIVKGDIDNYFKAVTDACT 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRI 214 ++W+DD+Q+ K +E P M + Sbjct: 105 GLLWVDDAQIVSTKTNKYYSE---NPHVEMLV 133 >UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteriaceae RepID=A4W6Z5_ENT38 Length = 119 Score = 59.1 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 9/96 (9%) Query: 116 WRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-----PAVKRPDL 170 W+ R A+ A A +TFVMP P+ K P +PD Sbjct: 20 WKTRPAVMRYRAFCDEARLRRIHLPESGAHVTFVMPMPTSWSKKKREQFDGKPHQSKPDC 79 Query: 171 DKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 D + +A++D L D DDS V D K+ E Q Sbjct: 80 DNMLKALMDALFD----DDSSVWDCRITKLWGEKGQ 111 >UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM15_PEDAC Length = 148 Score = 59.1 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 55/146 (37%), Gaps = 19/146 (13%) Query: 83 SKDFMGFKKAPEGSPPGTRGPAILKESSA----AVGPWRERIALASADAMLSAGLPVLDK 138 + K +G P P + ++ A +++R L + G P++ Sbjct: 11 RRCPQVIKLVIDGEPVAASRPRVTRKGWAYIAPKYKAYKDRTHLIVKN--QYKGEPLM-- 66 Query: 139 KYPVRASLTFVMPRPSG-----TPKSYTPPA--VKRPDLDKLARAVLDGLTDVVWLDDSQ 191 ++ TF + + + +PD+D L +AV D T VVW DD+Q Sbjct: 67 -GALKVKTTFYRSVQKSVSKAERNRRLSNEHRPIFKPDIDNLFKAVTDACTGVVWHDDNQ 125 Query: 192 VDDLHARKVLAELSQQPGCHMRIASP 217 + + K+ AE +P M + Sbjct: 126 IVSVEMDKMYAE---EPRVEMEVHEL 148 >UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A6QIJ7_STAAE Length = 138 Score = 58.3 bits (139), Expect = 2e-07, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%) Query: 121 ALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-----VKRPDLDKLAR 175 L +P L+ + ++ L F P K A V +PD+D L + Sbjct: 40 KYTEHKKYLQNQMPKLNLENALKIELEFYFTPPKSWSKKKKTQAIGQLKVTKPDIDNLMK 99 Query: 176 AVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VLD + +W DD+Q+ ++ + K +P +RI Sbjct: 100 TVLDACNNYLWKDDNQIAEITSSKRY---GIEPKIIIRIEEI 138 >UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacterium longum subsp. infantis RepID=B7GQZ5_BIFLI Length = 142 Score = 57.9 bits (138), Expect = 3e-07, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 14/115 (12%) Query: 109 SSAAVGPWRERIALASADAMLSAGLPVLDK-KYPVRASLTFVMPRPSGTPKSYTPPAVKR 167 + A+ P R A A P + PVR F M R Sbjct: 10 NGHAMTPKRTVRAEERLFAEFRLKYPQAKPYQCPVRLEAEFWM------------SHRGR 57 Query: 168 PDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDE 222 PDLD L + VLD L V ++DD+QV + HA K + ++ G R GD Sbjct: 58 PDLDNLLKLVLDSLNGVAYVDDAQVVESHACKRMPDMWVY-GAKGRYRRRKSGDP 111 >UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetobacter pasteurianus RepID=C7JFF8_ACEP3 Length = 151 Score = 56.8 bits (135), Expect = 5e-07, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 9/114 (7%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 ++ G P + + A+ G P L P+ SL Sbjct: 40 YRLTIPGLLRAKGRPRFGNGRTFTYAKTVQAEKHIQRHAIEQIGKPCL--TGPLHVSLMI 97 Query: 149 VMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLTDVVWLDDSQVDDL 195 + P + T A RPD+D + D L + W DD+Q+ D Sbjct: 98 NIAPPPSWSRKKTADALAGRILPTSRPDIDNQMKTAADALNGIAWKDDAQIVDA 151 >UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillus crispatus RepID=C7Y630_9LACO Length = 161 Score = 56.8 bits (135), Expect = 7e-07, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 53/174 (30%), Gaps = 40/174 (22%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +PG+ PQ + ++A T P A + + + + A Sbjct: 6 IKFVIPGE--PQSKERPRTVRRA---GGVRTYTP-------AKTHRYEDIVRYFAVYARK 53 Query: 130 -SAGLPVLDKKYPVRASLTFVMPRPSGTPK-----SYTPPAVKRPDLDKLARAVLDGLT- 182 ++ + V F +P+ + K+PD D +A+ + DG+ Sbjct: 54 EHKISEPINSQCGVSIKAYFGIPKSFSKKRRELCLKGKERPTKKPDSDNIAKIIFDGMNP 113 Query: 183 ---------------DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 D + DD + K S P + + W D Sbjct: 114 KMKLNKALHKKMVLQDGFYEDDKLIVTHSVEKWY---SMHPHVEVTVT---WED 161 >UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IDV7_9CLOT Length = 158 Score = 56.0 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 37/162 (22%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ +PG+P +G P GT P + + ++ Sbjct: 16 IKLTIPGEPCAKGR---------PRVGKFGTYTP-------EKTLNYETLVK---ELYII 56 Query: 130 SAGLPVLDKKYPVRASLTFVMPR---PSGTPKSYTP------------PAVKRPDLDKLA 174 L + + F +P+ P K+PD D + Sbjct: 57 QHANKKLQGQLKIDIKAYFKIPQGEIPKAKKPKPQTLQRYNDILNGKIRHTKKPDWDNVG 116 Query: 175 RAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 + + D L + + DDSQ+ K + P + I+ Sbjct: 117 KIISDALNGLAYDDDSQIVSAIVEKFYSN---DPRVEVEISE 155 >UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepID=B8I135_CLOCE Length = 136 Score = 55.6 bits (132), Expect = 1e-06, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 91 KAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVM 150 K + ++ P + + A A A L+ +P PVR + + Sbjct: 13 KKVPTVTHQEKQVKVVNGKPVFYEPDKLKAARAKLQAHLAKYVPDKPYTGPVRLMVKWCF 72 Query: 151 PRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPG 209 P +PD D L + + D +TD+ W DD+ V K AE+ PG Sbjct: 73 PVTGKHKNG--EYKTSKPDTDNLQKLLKDVMTDLRFWKDDALVASEIVEKFWAEV---PG 127 Query: 210 CHMRIASP 217 + I Sbjct: 128 IFIAIEEL 135 >UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteriaceae RepID=A4WB46_ENT38 Length = 151 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 10/131 (7%) Query: 80 PQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKK 139 P + F F + + P + A W++R + A + + Sbjct: 13 PPNHRAFPAFPRVVQIMKVYNILPMGKPRMTRADK-WKKRPEVMRYRAFCDHVRLLGVEL 71 Query: 140 YPVRASLTFVMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDD 194 + +TF++P P K P +PD D L +A++D + + DD+ + D Sbjct: 72 PEANSHVTFILPMPQSWSKKKRLEYNGKPHQGKPDFDNLMKALMDAI----FEDDAHIWD 127 Query: 195 LHARKVLAELS 205 K+ E Sbjct: 128 ARVTKLWGEEG 138 >UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A2M1_BIFAD Length = 173 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 43/153 (28%), Gaps = 44/153 (28%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 +PG+P +G F G++ E + + M Sbjct: 7 DFDIPGEPVAKGRPRFYGYRAVTP----------------QHTRDAEELVR--NQFHMFY 48 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDS 190 LD V L F R +PDLD L + V D L + ++DD Sbjct: 49 PHAEPLDGD--VMMILMFYKGRH------------GKPDLDNLEKLVKDALNGLAYVDDQ 94 Query: 191 QVDDLHARKVLAELSQQPGCHMRIASPGWGDEA 223 QV + + WG A Sbjct: 95 QVKLTLCAMLEPD------------RMAWGQRA 115 >UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD Length = 146 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 53/153 (34%), Gaps = 40/153 (26%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +P +P PQ F + A E WR+++ + Sbjct: 2 VKFTIPIEPKPQKRPRFSRWSGAYEDKDMMA---------------WRKQVTDYVKNNYE 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV------------------KRPDLD 171 P D V TF + P K + A K+PDLD Sbjct: 47 G---PYFDDGLKVDV--TFYLKAPELVSKKPSERARDKTKQKYQDYINELLYVPKKPDLD 101 Query: 172 KLARAVLDGLTD--VVWLDDSQVDDLHARKVLA 202 L +AV D ++ VVW DD+ + + RK+ + Sbjct: 102 NLEKAVYDSISKSEVVWTDDNIIVEHTTRKLYS 134 >UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BFH9_CLOPE Length = 131 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 7/75 (9%) Query: 139 KYPVRASLTFVMPRPSGTPKSYTPPAV-------KRPDLDKLARAVLDGLTDVVWLDDSQ 191 + ++ + P K K+PD D + + +LD L + + DD+ Sbjct: 48 EGSIKVLIVAYYKIPKSYSKKRVQAIRDGLEKPRKKPDADNIGKIILDSLNGIAYKDDAY 107 Query: 192 VDDLHARKVLAELSQ 206 V D K E + Sbjct: 108 VADFRVIKEYTEELE 122 >UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A4110 Length = 107 Score = 54.8 bits (130), Expect = 2e-06, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Query: 121 ALASADAMLSAGLPVLDKKYPVRASLTF-VMPRPSGTPKSYTPPAVKRPDLDKLARAVLD 179 A ++A LP LD +Y + + +P K TP D+D A+ V+D Sbjct: 12 AYKVYQKAIAAALPKLDSQYTGELEVILEFVCKPIAKSKFTTPMG----DVDNFAKGVMD 67 Query: 180 GLTD-VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 LTD W DD Q+ L RK L + P + I Sbjct: 68 TLTDEGWWEDDRQIMQLAVRKRFPALGEDPHIRIYIREL 106 >UniRef50_C2LH12 Endodeoxyribonuclease RusA n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LH12_PROMI Length = 131 Score = 53.7 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 9/68 (13%) Query: 143 RASLTFVMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHA 197 A LTFV+P P K P +RPD+D L +AV+D + D +D +V ++ A Sbjct: 49 GAHLTFVIPMPKSWSKKKRIEMNGKPHQQRPDVDNLIKAVMDAIFD----EDCRVWNISA 104 Query: 198 RKVLAELS 205 K+ E Sbjct: 105 SKLWGEQG 112 >UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3762E Length = 131 Score = 53.7 bits (127), Expect = 6e-06, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 6/92 (6%) Query: 126 DAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV- 184 A LS P ++ + P + P +PD D L +A D +T++ Sbjct: 42 KAYLSQHRPGAPLTGALQVVTKWCFPIKAKHHDG--EPYTNKPDADNLCKAFYDIMTELG 99 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 W DD Q+ K A Q+PG +++I Sbjct: 100 YWKDDKQIYSSITEKFWA---QRPGIYVKIEE 128 >UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C2M4_THAPS Length = 243 Score = 53.3 bits (126), Expect = 7e-06, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 22/159 (13%) Query: 70 LRMFVPGKPAPQGS-KDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G P P + GF P + ++L P + +M Sbjct: 78 IKFTIRGNPKPLVRHRSSRGFMYNPSSAAQERFRDSLLSMLPRRYHP-----TILDDQSM 132 Query: 129 LSAGLPVLDKKYP----VRASLTFVMPRPS----------GTPKSYTPP--AVKRPDLDK 172 V + + + +TF + RP G K P R D+D Sbjct: 133 DDGKAAVPNVLFSQHEFLAMEVTFRLKRPKNHFVGNKPGTGRMKPTAPGKFHNSRTDIDN 192 Query: 173 LARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCH 211 L + V+D L ++++DD QV L A K+L G Sbjct: 193 LTKFVMDSLNGLLYVDDKQVVSLSAIKLLDSEGLCEGAT 231 >UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB Length = 137 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 6/93 (6%) Query: 126 DAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV- 184 ++L+ +P P+R ++ ++ P+ G+ +PD D L + + D +T++ Sbjct: 50 TSLLAQHVPPSKLDGPIRLTVKWLFPKIKGSTNGQYK--TTKPDTDNLQKLLKDCMTELG 107 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 W DD+QV K A+ G ++++ Sbjct: 108 FWNDDAQVASEIIEKFWAD---TVGIYVKVEEL 137 >UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MNI2_ANATD Length = 124 Score = 50.6 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 25/121 (20%) Query: 87 MGFKKAPEGSPPGTRGPAILKESSAAVGP-----WRERIALASADAMLSAGLPVLDKKYP 141 M + K + P + L + P + E I + + P Sbjct: 1 MAYFKIEIQTKPVPKARPRLGANGRMYTPKETREFEELIGWTTRSVVRKPIEK------P 54 Query: 142 VRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVL 201 V+ ++ R D D +A+A+LDGL+ V ++DD QV DL RK+ Sbjct: 55 VKVNIDVYSK--------------TRADFDNIAKAILDGLSGVAFIDDRQVVDLRIRKLT 100 Query: 202 A 202 Sbjct: 101 P 101 >UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA superfamily n=1 Tax=Bacillus cereus H3081.97 RepID=B5V5C5_BACCE Length = 135 Score = 49.4 bits (116), Expect = 9e-05, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 16/89 (17%) Query: 112 AVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLD 171 + W+ R+ A+ + P ++ S+T+ S PD+D Sbjct: 22 RLQEWKARVRSAAELYWPTEDSP---SDKQLKLSITYYYENTS-------------PDVD 65 Query: 172 KLARAVLDGLTDVVWLDDSQVDDLHARKV 200 + + + D L +V+ DD Q+ D K Sbjct: 66 NIIKPIQDALVGLVYNDDDQIIDTSCGKR 94 >UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRE3_NITHX Length = 112 Score = 49.1 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 20/99 (20%) Query: 101 RGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY 160 RG L R ++ A + G P+ + PV L + + Sbjct: 18 RGRRFLTTDGK-----RTKLLNAVSARKQYRGAPL---EGPVCVELQVYFKSKASS---- 65 Query: 161 TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARK 199 D+D + +A LD LT ++W DD Q+ +LHA K Sbjct: 66 --------DIDNVCKAALDSLTGILWKDDRQIQELHAYK 96 >UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes RepID=C2E9I5_9LACO Length = 159 Score = 49.1 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 6/106 (5%) Query: 113 VGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDK 172 P + + A L P P+R +T+ + +PD+D Sbjct: 50 YEPEKLKKTRALLMERLDEHKPDEPMHGPLRLVVTWCFKKKGKHVDG--EYKTTKPDVDN 107 Query: 173 LARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 + + + D +T + W DD V L + K A++ PG ++ I Sbjct: 108 MLKLLQDCMTRLGFWDDDRFVVSLISEKYWADV---PGIYIEIKEM 150 >UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=53 Tax=root RepID=RUSA_SHISS Length = 120 Score = 49.1 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 21/107 (19%) Query: 100 TRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKS 159 RG + A +R+ + +AML GL PV+ + MP Sbjct: 21 NRGRTHISAEGQA---YRDNVTRIIKNAMLDIGL-----AMPVKIRIECHMPDRRRR--- 69 Query: 160 YTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELS 205 DLD L +A D LT WLDD+QV D K+ Sbjct: 70 ---------DLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKG 107 >UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3T9_9BACT Length = 151 Score = 47.9 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 9/95 (9%) Query: 128 MLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT----PPAVKRPDLDKLARAVLDGLTD 183 +L P VR LTF P + K + P +PD D A+ D L Sbjct: 51 LLVTHRPPQPLAGFVRCHLTFTWPWLAKHTKKHRAFGWYPHGGKPDWDNAAKLFCDCLKT 110 Query: 184 VVW--LDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V + DD+Q+ D K + PG +R++ Sbjct: 111 VGFFQRDDAQIFDGRLIKGHGDR---PGIRVRLSE 142 >UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=13 Tax=root RepID=RUSA_BPR1T Length = 131 Score = 47.1 bits (110), Expect = 5e-04, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 3/77 (3%) Query: 125 ADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV 184 A M + +K P++ S+TF K + RPDLD L + + D +T + Sbjct: 43 AQLMKNKPKECFEKNVPLKLSVTFFYAI--KQKKRWWQWKTSRPDLDNLMKNLQDYMTKL 100 Query: 185 -VWLDDSQVDDLHARKV 200 + DDSQ+ L A+KV Sbjct: 101 RYYSDDSQIVWLEAKKV 117 >UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ91_9FIRM Length = 121 Score = 46.4 bits (108), Expect = 7e-04, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 19/39 (48%) Query: 167 RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELS 205 +PD+D + + D L + +LD+ Q+ K + + Sbjct: 59 KPDIDNIMKITADALNGLAYLDNKQIISCTVGKYYSNVQ 97 >UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadaceae RepID=Q0AN00_MARMM Length = 112 Score = 43.7 bits (101), Expect = 0.005, Method: Composition-based stats. Identities = 20/42 (47%), Positives = 27/42 (64%) Query: 163 PAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAEL 204 PA D+D +A+AVLD LT VV+ DDSQV+ L +V + Sbjct: 52 PASPDHDVDGVAKAVLDALTGVVFHDDSQVERLLVTRVEGDR 93 >UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacteraceae RepID=B0T4W4_CAUSK Length = 132 Score = 43.3 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 22/38 (57%) Query: 169 DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 DLD LA+A+LD + + DD+QV L + AE + Sbjct: 76 DLDNLAKALLDAIKGYAFHDDAQVARLLVERRPAERER 113 >UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XIH3_SYNP2 Length = 135 Score = 43.3 bits (100), Expect = 0.008, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 20/32 (62%) Query: 169 DLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 D+D + + + D + +V++DD QV D+ RK Sbjct: 64 DVDNIVKPIQDAIIGLVYIDDDQVTDVLVRKR 95 >UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter formigenes RepID=C3X8S6_OXAFO Length = 222 Score = 43.3 bits (100), Expect = 0.008, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 11/100 (11%) Query: 110 SAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGT-PKSYTPPA---- 164 S ++ R+ A+ +A + P V S RP + PA Sbjct: 32 SPEARAYQNRVRRAAREAGVLCPFP-----GRVAVSYVLYPKRPLDWVRRQRMNPARWDD 86 Query: 165 -VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAE 203 V+ DLD + + D + +V+ +D+ + + + + + Sbjct: 87 SVQCMDLDNAQKVLFDAMEGIVYENDNLIRRIEGERAVPD 126 >UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribonuclease n=34 Tax=root RepID=B4TRD0_SALSV Length = 129 Score = 42.5 bits (98), Expect = 0.013, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 7/87 (8%) Query: 116 WR--ERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT----PPAVKRPD 169 WR + A A + +AG +P+P+ P S PP + D Sbjct: 15 WRHPNKGAFAGKSLISAAGRKFQSTACAAIVEQLRRLPKPTSAPASVEIVLFPPDNRIRD 74 Query: 170 LDKLARAVLDGLTDV-VWLDDSQVDDL 195 LD +A+ D LT VW DDSQV + Sbjct: 75 LDNYNKALFDALTHAGVWEDDSQVKRM 101 >UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribonuclease n=5 Tax=Enterobacteriaceae RepID=C4X6W2_KLEPN Length = 132 Score = 41.7 bits (96), Expect = 0.020, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 35/89 (39%), Gaps = 7/89 (7%) Query: 116 WRERIALASADAML--SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT----PPAVKRPD 169 WR + +L AG +P+PS +P PP +R D Sbjct: 15 WRSPNKGTAKGKLLVSEAGRKFKHAVRAAIIEQLKAVPKPSASPAEVVIVLHPPDYRRRD 74 Query: 170 LDKLARAVLDGLTDV-VWLDDSQVDDLHA 197 LD +A+ D LT +W DDSQV + Sbjct: 75 LDNYNKALFDALTYAGIWEDDSQVKRMTI 103 >UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobacteria RepID=B2U8I2_RALPJ Length = 158 Score = 41.4 bits (95), Expect = 0.023, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 16/134 (11%) Query: 77 KPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVL 136 P P + + + S P + E+ ++E++A + A + L Sbjct: 8 LPYPISANRYWASRIVKPKSGPSFVSTYVTPEA----KAYKEQVAWLAKSAGVREPL--- 60 Query: 137 DKKYPVRASLTFVMPRPSGTPKSYT------PPAVKRPDLDKLARAVLDGLTDVVWLDDS 190 V+ T RP + V+ DLD + +LD L VV DD Sbjct: 61 --ACRVQIDYTLYPKRPQDWERRVAKDPLQWDNTVQCIDLDNAQKVLLDALKGVVIQDDG 118 Query: 191 -QVDDLHARKVLAE 203 QV +HA + + + Sbjct: 119 WQVRRIHAERGVPD 132 >UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B534_METEA Length = 225 Score = 40.6 bits (93), Expect = 0.044, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 32/79 (40%) Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL 181 A A+ AG + + P+ SL P DLD L +AVLD + Sbjct: 116 AAFESAVRMAGAAAMRGREPIAVSLGIDAILAFDGDAGLWPTDNTDGDLDNLVKAVLDAV 175 Query: 182 TDVVWLDDSQVDDLHARKV 200 VV+ DD V ++ K+ Sbjct: 176 NGVVFKDDRLVVEMRLAKI 194 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX0... 200 4e-50 UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncu... 133 5e-30 UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas a... 129 6e-29 UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas p... 129 1e-28 UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJ... 128 2e-28 UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO 127 3e-28 UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3... 126 5e-28 UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli... 126 6e-28 UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans ... 126 7e-28 UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobi... 126 8e-28 UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacte... 125 1e-27 UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A... 124 2e-27 UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteoba... 123 5e-27 UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verruc... 123 5e-27 UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidami... 123 6e-27 UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q... 120 3e-26 UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN 119 5e-26 UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus ... 119 7e-26 UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminoc... 118 1e-25 UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus lichenifo... 118 2e-25 UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 116 9e-25 UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus Re... 115 1e-24 UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax... 114 3e-24 UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium p... 113 5e-24 UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Ta... 112 8e-24 UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9... 112 8e-24 UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter s... 111 2e-23 UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostri... 111 2e-23 UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus... 110 4e-23 UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcu... 109 6e-23 UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacte... 109 1e-22 UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea f... 108 2e-22 UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus ... 107 3e-22 UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Strepto... 107 4e-22 UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opituta... 107 4e-22 UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillu... 105 1e-21 UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia ... 105 1e-21 UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales R... 104 2e-21 UniRef50_C0X7X1 Possible crossover junction endodeoxyribonucleas... 104 2e-21 UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas s... 104 2e-21 UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillu... 104 3e-21 UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia... 104 3e-21 UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteri... 102 1e-20 UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collins... 102 1e-20 UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7... 101 2e-20 UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tric... 101 2e-20 UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4Z... 101 2e-20 UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q... 100 3e-20 UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Ta... 100 4e-20 UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospiri... 100 6e-20 UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes Re... 99 1e-19 UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornu... 99 1e-19 UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepI... 98 2e-19 UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB 96 7e-19 UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudona... 95 1e-18 UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A... 95 2e-18 UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD 95 2e-18 UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomacu... 95 2e-18 UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Ta... 94 5e-18 UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collins... 93 6e-18 UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Rumino... 92 1e-17 UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteri... 91 3e-17 UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidob... 90 6e-17 UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetob... 90 6e-17 UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Ta... 89 1e-16 UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella l... 89 1e-16 UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Str... 88 3e-16 UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2... 84 4e-15 UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacteri... 82 1e-14 UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=... 82 2e-14 UniRef50_C2LH12 Endodeoxyribonuclease RusA n=1 Tax=Proteus mirab... 81 2e-14 UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=... 76 9e-13 UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter h... 74 4e-12 UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum ... 71 5e-11 UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA su... 69 1e-10 UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=... 69 1e-10 UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermos... 64 3e-09 Sequences not found previously or not previously below threshold: UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylo... 61 5e-08 UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synecho... 55 2e-06 UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacterac... 54 4e-06 UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscilla... 54 5e-06 UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter f... 54 6e-06 UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterob... 53 6e-06 UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease... 53 7e-06 UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobac... 52 1e-05 UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadace... 52 2e-05 UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA fa... 51 3e-05 UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 ... 51 4e-05 UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorell... 51 5e-05 UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia ... 50 6e-05 UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultu... 50 7e-05 UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis... 49 1e-04 UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis v... 48 2e-04 UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillu... 48 3e-04 UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria ... 47 3e-04 UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=N... 47 4e-04 UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA fa... 47 4e-04 UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomo... 46 0.001 UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glos... 46 0.001 UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthro... 46 0.002 UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribo... 45 0.002 UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bactero... 45 0.002 UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626... 45 0.002 UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribo... 44 0.004 UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia ... 43 0.006 UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon... 43 0.006 UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=... 43 0.011 UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichel... 42 0.014 UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=... 42 0.016 UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquat... 42 0.019 UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=... 41 0.047 UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvula... 41 0.047 UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus ... 40 0.066 >UniRef50_Q9ZX08 Gp72 n=1 Tax=Mycobacterium phage TM4 RepID=Q9ZX08_BPMT4 Length = 213 Score = 200 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 133/193 (68%), Positives = 157/193 (81%), Gaps = 9/193 (4%) Query: 30 EHAKAAAAELLLDMVPAESYDVLYAALSARVTYERNGGRQLRMFVPGKPAPQGSKDFMGF 89 + AK AAA+ +L M+PA++++ L AL ARVT +RNG RQLR+FVPG+PAPQGSKDF GF Sbjct: 9 DEAKLAAADAVLAMLPADAHEALREALHARVTGDRNGSRQLRLFVPGRPAPQGSKDFKGF 68 Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFV 149 K G AILKESS AVGPWRER+ALA+A A+L+ GLPVL K++ + AS+TFV Sbjct: 69 SKT---------GKAILKESSDAVGPWRERVALAAASAILAEGLPVLAKEFSIAASVTFV 119 Query: 150 MPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG 209 MPRP+G PK TPPAVKRPDLDKLARA+LDGLTDVVW+DDSQV DLH RKVLAEL+Q PG Sbjct: 120 MPRPAGAPKRSTPPAVKRPDLDKLARAILDGLTDVVWIDDSQVVDLHCRKVLAELTQPPG 179 Query: 210 CHMRIASPGWGDE 222 H+RIASPGWGDE Sbjct: 180 AHIRIASPGWGDE 192 >UniRef50_B3TA02 Putative endodeoxyribonuclease RusA n=1 Tax=uncultured marine microorganism HF4000_APKG7N23 RepID=B3TA02_9ZZZZ Length = 145 Score = 133 bits (334), Expect = 5e-30, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 17/153 (11%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 +++ +PGKP QG F +G ++ ++ IA + A Sbjct: 2 RIKFTLPGKPVAQGRPRFYR------------KGNFVVATDPKPSKVYKADIAYIAQKAC 49 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPK----SYTPPAVKRPDLDKLARAVLDGLTDV 184 AGL L + P+ + P P + KRPD D +A++V DGL V Sbjct: 50 EEAGLDGL-FEGPLGIQILAYFPCPKSKWRVKNPRPEEHHSKRPDADNIAKSVKDGLNGV 108 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 ++ DD Q+ +L RK +A + P + + Sbjct: 109 LYHDDGQISELIVRKRIAAQGEGPRIEVELYKM 141 >UniRef50_A6V3Y0 Endodeoxyribonuclease RusA n=3 Tax=Pseudomonas aeruginosa RepID=A6V3Y0_PSEA7 Length = 149 Score = 129 bits (325), Expect = 6e-29, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 26/157 (16%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADA 127 R + VPG+P +G G + A + +A+A+ +A Sbjct: 5 RPVVFTVPGEPVGKGRPR---------IGRVGAHARMFTPAKTVA---YEGLVAMAAQEA 52 Query: 128 MLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDG 180 + L PV L P P K A + D D +AV D Sbjct: 53 LAGRSL----IAGPVLIELRMFHPIPRSWSKKRQAMALVGEVMPTVKCDADNCLKAVCDA 108 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L V W DD+QV ++ K AE+ P ++I Sbjct: 109 LNGVAWKDDTQVVNVMLAKRYAEV---PRVEVKIVPL 142 >UniRef50_B0KHD7 Endodeoxyribonuclease RusA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KHD7_PSEPG Length = 146 Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 57/156 (36%), Gaps = 26/156 (16%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 + VPG+P +G G + IALA +AM Sbjct: 6 PVSFLVPGEPVGKGRPR---------IGKVGNHARMFTP---QKTASYEGLIALAGTEAM 53 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGL 181 L + V + V+ P K A K+PD+D + +A+ DGL Sbjct: 54 AGRTL----LEGAVMVEMRIVLAIPQSMSKKRKAMAIAGELFPTKKPDMDNVIKAIYDGL 109 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VVW DD QV D RK E+ PG H+RI Sbjct: 110 NGVVWKDDVQVVDAFVRKRYGEV---PGVHVRIVPL 142 >UniRef50_B5LJU5 Gp207 n=8 Tax=unclassified Myoviridae RepID=B5LJU5_9CAUD Length = 151 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 54/147 (36%), Positives = 80/147 (54%), Gaps = 7/147 (4%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ FVPG APQGSK+ G ++++S + PWR + + + AM Sbjct: 2 EIDFFVPGLAAPQGSKNSY----TIRNKAGKVVGVNTVEQNSKTLRPWRADVKVFAQKAM 57 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPK-SYTPPAVKRPDLDKLARAVLDGLTDVVWL 187 G + D + FVM RPSGTPK TPPAVK+PDLDKL RA+ D L V+ Sbjct: 58 QERGQQICDD--AIYLHCDFVMKRPSGTPKTRRTPPAVKKPDLDKLIRAIGDALKGTVYT 115 Query: 188 DDSQVDDLHARKVLAELSQQPGCHMRI 214 +DS++ ++ A K +AE+ + PG + + Sbjct: 116 EDSRIVEIRATKRIAEIGETPGVFIHV 142 >UniRef50_C4VM20 Gp57 n=7 Tax=root RepID=C4VM20_9LACO Length = 139 Score = 127 bits (319), Expect = 3e-28, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 27/155 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + +PGKP QG F + + A ++ + + Sbjct: 3 IEFTIPGKPVGQGRPRFSRHRGYVQTYD------------PAKSRQYKAIATMCAQRVYS 50 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 + P++ ++ K+PD+D + + ++D L Sbjct: 51 GE-----PLETPLKITVKAYFGLYKSYTNKRREACLSGQEVPTKKPDIDNIVKGIMDSLN 105 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 V++ DD QV L A K AE +P + + Sbjct: 106 GVIYHDDKQVIQLVAFKAYAE---KPRVEVTVEEL 137 >UniRef50_D0UZE3 PCQ3_94 n=1 Tax=Streptomyces sp. W9 RepID=D0UZE3_9ACTO Length = 228 Score = 126 bits (317), Expect = 5e-28, Method: Composition-based stats. Identities = 55/162 (33%), Positives = 78/162 (48%), Gaps = 13/162 (8%) Query: 62 YERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIA 121 Y N L V G P PQGSK +G+ ++ + +++ESS V PWR+++ Sbjct: 72 YPWNTHPALTATVHGLPGPQGSKTPIGYGRSRTTG----KTIPLMRESSTKVKPWRDKVQ 127 Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL 181 A+ A L P+ PV A +TF MP+P PK PD+DKL R+ D + Sbjct: 128 -AAITAALHTSAPL---AGPVYAHITFTMPKPVRAPKRRRTYPAVTPDIDKLERSTYDAI 183 Query: 182 TD-VVWLDDSQVDDLHARKVLAELS----QQPGCHMRIASPG 218 T W DD V + HARKV + QPG +R+ + G Sbjct: 184 TKAAAWKDDGCVIESHARKVYPDEHPDALDQPGALIRLYTLG 225 >UniRef50_A8U815 Putative uncharacterized protein n=3 Tax=Bacilli RepID=A8U815_9LACT Length = 145 Score = 126 bits (316), Expect = 6e-28, Method: Composition-based stats. Identities = 30/157 (19%), Positives = 53/157 (33%), Gaps = 27/157 (17%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++++ VPG+P PQG F ++ +A + Sbjct: 2 EIKITVPGQPVPQGRPKFTTIGGHARAYD------------PKKSVDYKRIVAYHAMQH- 48 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGL 181 P + + + K A V +PD D A+ LD + Sbjct: 49 ----KPKQLLEGELEVEILIYKECLKSFSKRNMELAEIGQLRPVTKPDADNYAKGPLDAM 104 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 ++W DD Q+ DL ARK + +P + + + G Sbjct: 105 KGIIWKDDGQIVDLIARKYYSS---KPRIEITVRTLG 138 >UniRef50_C6P1J2 Endodeoxyribonuclease RusA n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P1J2_9PROT Length = 143 Score = 126 bits (316), Expect = 7e-28, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 55/157 (35%), Gaps = 26/157 (16%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 + VPG P +G F RG + + + + LA+A AM Sbjct: 3 SITFTVPGTPVGKGRPKF------------ARRGKFVTTYTPEKTASYENLVKLAAAKAM 50 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGL 181 + S+ + P+ + A +PD+D + + + D + Sbjct: 51 DGRQ----PIDGAAQVSIWLWVTPPASWSQKKQRQALAHEIFPTTKPDMDNVVKGIFDAM 106 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 ++VW DD QV DL K +E ++I G Sbjct: 107 NEIVWQDDKQVIDLSCYKRYSE---TARAEVKITQIG 140 >UniRef50_Q2G3Y0 Endodeoxyribonuclease RusA n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G3Y0_NOVAD Length = 135 Score = 126 bits (315), Expect = 8e-28, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 56/153 (36%), Gaps = 24/153 (15%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 + VPG P +G F+ + + IA A++ AM Sbjct: 3 EFSFTVPGVPVGKGRPRFVKATGR--------------AYTPEKTASYESLIAYAASQAM 48 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP---PAVKRPDLDKLARAVLDGLTDVV 185 A P+ + V P P+ K +PD D + +A+ D L +V Sbjct: 49 RGAQ----PINAPIGIKVQAVFPIPASWTKKRKESAVWHTSKPDGDNILKALGDALNGIV 104 Query: 186 WLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 W DDSQV KV ++ PG H+ + + G Sbjct: 105 WADDSQVARTSIAKVYGDV---PGLHVFVEALG 134 >UniRef50_C4ZCC2 Putative uncharacterized protein n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZCC2_EUBR3 Length = 149 Score = 125 bits (313), Expect = 1e-27, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 25/159 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 +Q+R +PG+P + F + + + + L + Sbjct: 5 MKQIRFTIPGQPFGKQRPKFSRAGAYVKTY------------TPKETTSYENLVKLFYNE 52 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLD 179 A + + + + P T K K+PD D + + V D Sbjct: 53 AAKGK---MFPEGAMLDVRIIAYYEIPKSTSKKKRREMLEHRIRPTKKPDWDNIGKIVCD 109 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 L V + DDS V D RK +E P + I G Sbjct: 110 SLNLVAYHDDSAVVDAQVRKFYSE---TPRIDVMIKVVG 145 >UniRef50_A4JMI5 Endodeoxyribonuclease RusA n=10 Tax=root RepID=A4JMI5_BURVG Length = 158 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 26/159 (16%) Query: 66 GGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 G R++ VPGKP +G F+ RGP + + + + +A+ Sbjct: 14 GARRVVFVVPGKPVAKGRPRFVR------------RGPHVRTYTPEPTERYENLVKMAAR 61 Query: 126 DAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVL 178 +AM + PVR + +P P+ + A K+PD D + +A+ Sbjct: 62 EAMRDS----EPYAGPVRLIVDIGVPIPASWSQRRQREAAAGVIGATKKPDADNVVKALK 117 Query: 179 DGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 DG+ VV+ DD QV DL K A PG + Sbjct: 118 DGMNGVVYGDDGQVVDLWVSKRYAT---TPGVRIEAIEL 153 >UniRef50_C1D8H9 Holliday junction resolvase n=2 Tax=Betaproteobacteria RepID=C1D8H9_LARHH Length = 145 Score = 123 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 44/156 (28%), Positives = 62/156 (39%), Gaps = 25/156 (16%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R VPG P +G + G E + IAL++ AM Sbjct: 4 VRFEVPGTPVGKGRPK--------VSTRGGKFARMYTPE---KTASYEGLIALSARQAM- 51 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLT 182 G P++D PV SL + P+ K A K+PD D + +AV DG+ Sbjct: 52 -GGRPLID--GPVDVSLMIRLAVPASWSKKKQAAALAGQVLPTKKPDADNVLKAVFDGMN 108 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 VVW+DD Q + RK A Q PG + + G Sbjct: 109 GVVWVDDVQACGVMLRKRYA---QTPGVTVVVRQMG 141 >UniRef50_UPI0001744C6C endodeoxyribonuclease RusA n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744C6C Length = 164 Score = 123 bits (308), Expect = 5e-27, Method: Composition-based stats. Identities = 49/159 (30%), Positives = 69/159 (43%), Gaps = 19/159 (11%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++L F+PG PAP GSK F+G K T+ ++ + WR + A+ + Sbjct: 2 NQRLSFFIPGVPAPGGSKRFVGIGKK-------TKRAILVDAAGQKNKDWRTAVGWAAHE 54 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY------TPPAVKRPDLDKLARAVLDG 180 L +R + TF MPRP G + RPD KLAR+ D Sbjct: 55 HFKGEVL-----TGALRVTFTFFMPRPKGHHGKRGLLPSAPAFPITRPDALKLARSTEDA 109 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 LT +VW DD+QV D +K A+ S GC + I Sbjct: 110 LTGIVWRDDAQVVDGGQKKRYAD-SCSAGCLVEIEELAS 147 >UniRef50_C0W9K9 Putative uncharacterized protein n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9K9_9FIRM Length = 135 Score = 123 bits (308), Expect = 6e-27, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 48/156 (30%), Gaps = 30/156 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + V G P +G F G + I A L Sbjct: 2 IEFCVFGDPRGKGRPRFRGHAYTDS-----------------KTRAYERMI----QGAFL 40 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLARAVLDGLT 182 +G + +K PV + P+ K +K+PD D + + V D L Sbjct: 41 QSGESMFPEKVPVGVEVECYFRIPTSYSKRRKGLCRENLELPLKKPDGDNVLKIVCDALN 100 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 + + DD+QV D+ RK +RI Sbjct: 101 GLAYKDDTQVSDMIIRKRYGRNEGY--IRVRIWEVK 134 >UniRef50_Q03G49 Holliday junction resolvase n=4 Tax=root RepID=Q03G49_PEDPA Length = 139 Score = 120 bits (301), Expect = 3e-26, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 50/152 (32%), Gaps = 27/152 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R+ V G+P PQG F G G + P +++ + Sbjct: 2 IRIEVAGEPVPQGRPRFSG-----RGGFVRSYDPP-------KSKEYKKHVKEEVQQQYH 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 + + L+ P K + + D+D +AV D T Sbjct: 50 GK-----PLEGQLLVELSVYRPIQKSISKKERDMRLLGFHRPIVKGDIDNYFKAVTDACT 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRI 214 ++W+DD+Q+ K +E P M + Sbjct: 105 GLLWVDDAQIVSTKTNKYYSE---NPHVEMLV 133 >UniRef50_Q925Z5 Lin1248 protein n=2 Tax=root RepID=Q925Z5_LISIN Length = 145 Score = 119 bits (299), Expect = 5e-26, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 27/155 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ + P PQ F + P ++++IA + Sbjct: 2 IKFTINIPPHPQERPRFRNAGNFVQTYDPP------------KSKEYKKKIANVAKMY-- 47 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV-------KRPDLDKLARAVLDGLT 182 P P++ L F + P K++ A+ RPD+D +A+LD L Sbjct: 48 ---APGTPISTPIQIKLIFFVSIPKSKSKAWKQRALLGQEFPSVRPDIDNYVKAILDALN 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 +++ DD ++ +L A K ++L P + I Sbjct: 105 GIMFSDDGKIVELIAYKRYSDL---PRTEVSITEL 136 >UniRef50_D2EM18 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM18_PEDAC Length = 146 Score = 119 bits (298), Expect = 7e-26, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 55/152 (36%), Gaps = 27/152 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +R+ VPG+P PQG F G G + P +++++A A D Sbjct: 2 IRIEVPGEPVPQGRPRFSG-----RGGFVRSYDPP-------KSREYKKKVAAAVKDQYH 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPP-------AVKRPDLDKLARAVLDGLT 182 Y V L+ P K V + D+D +AV D T Sbjct: 50 GD-----PVDYAVHVQLSIYRPIQKSLSKKEREMRLLGFHRPVVKGDIDNYFKAVTDACT 104 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRI 214 ++W+DD+Q+ K +E P M + Sbjct: 105 GLLWVDDAQIVSTKTNKYYSE---DPHVEMLV 133 >UniRef50_A7B3R6 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B3R6_RUMGN Length = 136 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 27/154 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + + +PGKP + F + + + + +A ++ Sbjct: 1 MVITIPGKPVGKARPRFRRAGFKV------------ITYTPPENKKYEKEVARIYKQSIG 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK-------RPDLDKLARAVLDGLT 182 VL P+R + P P K A+K +PDLD +A+ +LDGL Sbjct: 49 -----VLYTDIPLRVRILAKFPIPESWSKKNKEKALKGEIKPNKKPDLDNIAKIILDGLN 103 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V + DD QV L KV ++ +P + IA Sbjct: 104 GVAYTDDKQVTSLEIEKVYSD---EPCVVVYIAE 134 >UniRef50_Q65KQ9 Phage related protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65KQ9_BACLD Length = 140 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 19/146 (13%) Query: 88 GFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLT 147 P G+ T + +++ +++ I L + M L P + Sbjct: 5 NIPVEPMGAVRMTGRGKFVNKNAQRYLAYKDFIKLHAQKQMKGQQL----YTGPTVVKVL 60 Query: 148 FVMPRPSGTPKSYTPP-----AVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLA 202 F MP P K +K+PD+D L + V D L W DD+QV + KV Sbjct: 61 FSMPIPKSWSKKKQQEAISTVHIKKPDIDNLVKGVFDALNKTAWHDDNQVFMVIGAKVY- 119 Query: 203 ELSQQPGCHMRIASPGWGDEAIAAWQ 228 ++PG ++I G +A W+ Sbjct: 120 --GKEPGIEVQI--MG-----LAEWE 136 >UniRef50_Q184C6 Phage protein n=6 Tax=root RepID=Q184C6_CLOD6 Length = 139 Score = 116 bits (289), Expect = 9e-25, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 30/156 (19%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G+P + F K + + E I + Sbjct: 6 KVNFTIYGEPVGKERPRFNLATKR--------------TYTPNKTKSYEELIKWLYQSKV 51 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGL 181 + ++ +L K K+PD+D + + V D L Sbjct: 52 KHY------FEGYIKMTLRCYYSIAKSNSKKIKEQKRNNVLRPSKKPDIDNVIKVVADSL 105 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 + + DD+Q+ ++ A K ++ +P + + Sbjct: 106 NGIAYKDDTQIVEVVASKYYSD---KPRVEVILEDI 138 >UniRef50_P45911 Uncharacterized protein yqaN n=3 Tax=Bacillus RepID=YQAN_BACSU Length = 142 Score = 115 bits (288), Expect = 1e-24, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 29/157 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ V G+P QG + R P A +++ +AL ++ Sbjct: 4 IKFTVYGEPVAQGRPR-----GSIRNGKVHMRDP-------AKSKYFKQYVALVASQH-- 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP---------PAVKRPDLDKLARAVLDG 180 P PV + P P S +PD+D + V D Sbjct: 50 ---RPETIITGPVSMDVKVYRPMPKSVSNSKKKKEKAEKGLLRPTTKPDVDNYVKGVKDA 106 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L +++ DDSQV DL K +E +P + I Sbjct: 107 LNHLIYKDDSQVVDLKVSKFYSE---EPRVEVMIREV 140 >UniRef50_UPI0001B4F4F8 hypothetical protein ShygA5_48812 n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F4F8 Length = 171 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 78/161 (48%), Gaps = 11/161 (6%) Query: 62 YERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIA 121 Y+ + L + V G PQGSK +G+ ++ + + ++KESSA V PWR++++ Sbjct: 12 YDWDPVPALAIAVYGTAGPQGSKSPVGWGRSRKTG----KNIPLMKESSAKVKPWRDKVS 67 Query: 122 LASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGL 181 A A+L L V A +TF M +P PK PD+DKL RA D + Sbjct: 68 AAITAAILRGDAKPLH--GAVYAEITFTMAKPGSRPKRRRTYPAVSPDIDKLERATYDAI 125 Query: 182 TDV-VWLDDSQVDDLHARKVL----AELSQQPGCHMRIASP 217 T W DD +V + H RKV + QPG +R+ + Sbjct: 126 TTAKAWEDDGRVIENHNRKVYPGEHPDALDQPGAVIRLYTL 166 >UniRef50_C7IDV7 Endodeoxyribonuclease RusA n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IDV7_9CLOT Length = 158 Score = 113 bits (282), Expect = 5e-24, Method: Composition-based stats. Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 37/164 (22%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ +PG+P +G + + + ++ Sbjct: 16 IKLTIPGEPCAKGRPR----------------VGKFGTYTPEKTLNYETLVKELY---II 56 Query: 130 SAGLPVLDKKYPVRASLTFVMP---RPSGTPKSYTP------------PAVKRPDLDKLA 174 L + + F +P P K+PD D + Sbjct: 57 QHANKKLQGQLKIDIKAYFKIPQGEIPKAKKPKPQTLQRYNDILNGKIRHTKKPDWDNVG 116 Query: 175 RAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 + + D L + + DDSQ+ K + P + I+ Sbjct: 117 KIISDALNGLAYDDDSQIVSAIVEKFYSN---DPRVEVEISEVA 157 >UniRef50_C8RQI5 Endodeoxyribonuclease RusA family protein n=1 Tax=Corynebacterium jeikeium ATCC 43734 RepID=C8RQI5_CORJE Length = 143 Score = 112 bits (281), Expect = 8e-24, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 66/147 (44%), Gaps = 17/147 (11%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 L FVPG APQGSK+ +L ESS V PWR+ ++ + Sbjct: 8 LTFFVPGIAAPQGSKNAYR-----------RGQKIVLVESSKKVKPWRDTVSQVARFVCK 56 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 V ++ FVMPR PP V++PDLDK+ RAV D LT + + DD Sbjct: 57 R------PIDGAVTVAVHFVMPRTKAMRDKPAPPMVQKPDLDKMLRAVNDALTGIAYADD 110 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIAS 216 SQ+ L K A ++ G H+ I Sbjct: 111 SQIVRLTGSKRRAAPGEKTGAHITITP 137 >UniRef50_A5I2H9 Phage protein n=3 Tax=Clostridiales RepID=A5I2H9_CLOBH Length = 133 Score = 112 bits (281), Expect = 8e-24, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 43/154 (27%), Gaps = 29/154 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ + GKP + F + + + L Sbjct: 1 MKIVIDGKPMGKQRPRFNS--------------KTGNTYTPDKTVNYENWVKLCYQQQCK 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 L V A + P T K +PD+D +A+ +LD L Sbjct: 47 GEKL-----TGEVVAFINAYYVIPKSTSKKNKKDMLAGIIRPTIKPDVDNIAKVILDSLN 101 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 + + DD Q+ K E P + + Sbjct: 102 GLAYKDDKQIVFCAISKWYGE---NPRVEVILEE 132 >UniRef50_A3PHF9 Endodeoxyribonuclease RusA n=1 Tax=Rhodobacter sphaeroides ATCC 17029 RepID=A3PHF9_RHOS1 Length = 144 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 13/151 (8%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 G P + + + A P + ++ S ++ + PV + Sbjct: 2 VSFVIPGKPFAKQRHNFSRATGRAFTP-KATVSFESTVRDIALPKFPRPLEGPVSIRIEA 60 Query: 149 VMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAE 203 PK P ++PDLD + +++LDGL + + DDSQV + K Sbjct: 61 TFVPAPSWPKKRRLACLGQPHTQKPDLDNVEKSILDGLNRIAFADDSQVARVVKEKRWGP 120 Query: 204 LSQQPGCHMRIASPGWGDEAIAAWQAANGGA 234 ++Q + + G + +WQAA A Sbjct: 121 VAQT---VVVVEPLG----PLPSWQAAEAVA 144 >UniRef50_B0P3C6 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P3C6_9CLOT Length = 144 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 54/161 (33%), Gaps = 24/161 (14%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 +R VPG P + K GT + + I Sbjct: 1 METVRFTVPGAPKGKAR------AKTVRSKKGGTF-----SYTPEGTMLYENLIKCCYRQ 49 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLD 179 + + + P++ ++ P T K K+PD+D +A+++LD Sbjct: 50 ---ESNNIIFNDGQPLKVTIIAYYPIVKSTSKKKKQQMLEDLMFPTKKPDIDNIAKSILD 106 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWG 220 L + + DD+QV LH K AE P + I G Sbjct: 107 ALNKLAYRDDTQVVTLHMEKHYAE---DPRVEVEIEEIKNG 144 >UniRef50_B3XS14 Endodeoxyribonuclease RusA n=3 Tax=Lactobacillus RepID=B3XS14_LACRE Length = 149 Score = 110 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 27/155 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ +P Q +K V +++++ + Sbjct: 1 MKIIFNIEPVEQARPRATKTRKGIRLYD------------PKKVSTYKKQLGMMCKFQYK 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 P+ SL F S T K V +PD D ++ LDGL Sbjct: 49 DK-----PLDGPLIVSLKFYRHIQSSTSKKERELRITGAHRPVVKPDTDNYIKSTLDGLN 103 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 ++W DD+Q+ + A K ++ P + + Sbjct: 104 GLLWEDDNQIVKIVAEKYYSDR---PRIEIEVERL 135 >UniRef50_C1CGH5 Holliday junction resolvase n=2 Tax=Streptococcus pneumoniae RepID=C1CGH5_STRZJ Length = 143 Score = 109 bits (273), Expect = 6e-23, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 28/159 (17%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 +++ + +P PQ F RG + WR L A Sbjct: 1 MKLTLNIEPKPQSRPRF------------ARRGSFTTTYEDKDMKTWRNHCQLLI--ANQ 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPS--GTPKSYTP-------PAVKRPDLDKLARAVLDG 180 G P+L + +R L F + P K P K+PD+D +A+ D Sbjct: 47 YMGQPIL--EGALRTRLRFYIKPPQYISKVKKNQQALLDEIIPVGKKPDIDNYEKALYDS 104 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 ++ +V+ DD Q+ K + P + I Sbjct: 105 MSGIVFQDDGQIALHDVGKFYS---LNPRIEVEIEVMKS 140 >UniRef50_A8RCV3 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RCV3_9FIRM Length = 143 Score = 109 bits (271), Expect = 1e-22, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 47/155 (30%), Gaps = 28/155 (18%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 VPGKP + + G + + + + AM Sbjct: 3 TFSFTVPGKPFGKQRPKA---------TRRGVHASVYTPKETV---NYENLV-----VAM 45 Query: 129 LSAGLPV-LDKKYPVRASLTFVMPRPSGTPKSYTPPAVK-------RPDLDKLARAVLDG 180 P+ VR ++ P K + +PDLD + + + D Sbjct: 46 FKQKYPLDKPIDGEVRGTIRAFYQIPQSKSKKVKERMLNGEIKPMVKPDLDNIQKVIYDA 105 Query: 181 LTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIA 215 L + + DDS + + K +++ P + I Sbjct: 106 LNGIAYTDDSHIIAMRCAKFYSDV---PRVEVLIE 137 >UniRef50_B0G1B4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G1B4_9FIRM Length = 155 Score = 108 bits (269), Expect = 2e-22, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 27/162 (16%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 R G + + VPGKP + K G + P ++ + Sbjct: 9 RAGMQSVTFQVPGKPQGKAR------AKTVRNKSTGNI---------HSYTPEKDMLYEN 53 Query: 124 SADAMLSAGLP--VLDKKYPVRASLTFVMPRPSGTPKSY-------TPPAVKRPDLDKLA 174 A L++ PV + P K +K+PD+D + Sbjct: 54 YIKAQFQNRANGFYLERGKPVMLRIIARFLPPKSVSKKRQLDMLEGRELPLKKPDIDNIV 113 Query: 175 RAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 + V D L V + DD+Q+ + A K + + G + + Sbjct: 114 KVVADALNGVAYHDDTQIAMVIAAKTYSAME---GLDITVEE 152 >UniRef50_D2EM15 Holliday junction resolvase n=1 Tax=Pediococcus acidilactici 7_4 RepID=D2EM15_PEDAC Length = 148 Score = 107 bits (267), Expect = 3e-22, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 19/146 (13%) Query: 83 SKDFMGFKKAPEGSPPGTRGPAILKESSA----AVGPWRERIALASADAMLSAGLPVLDK 138 + K +G P P + ++ A +++R L + Sbjct: 11 RRCPQVIKLVIDGEPVAASRPRVTRKGWAYIAPKYKAYKDRTHLIVKNQYKGE-----PL 65 Query: 139 KYPVRASLTFVMPRPSGTPKSYTPPAVK-------RPDLDKLARAVLDGLTDVVWLDDSQ 191 ++ TF K+ + +PD+D L +AV D T VVW DD+Q Sbjct: 66 MGALKVKTTFYRSVQKSVSKAERNRRLSNEHRPIFKPDIDNLFKAVTDACTGVVWHDDNQ 125 Query: 192 VDDLHARKVLAELSQQPGCHMRIASP 217 + + K+ AE +P M + Sbjct: 126 IVSVEMDKMYAE---EPRVEMEVHEL 148 >UniRef50_A7DYE2 Putative uncharacterized protein n=1 Tax=Streptococcus phage M102 RepID=A7DYE2_9CAUD Length = 145 Score = 107 bits (266), Expect = 4e-22, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 28/156 (17%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 ++ + +P Q F + + + WR + + +A + Sbjct: 5 KIVINLEPKAQSRPRFARCGRGV------------VAYEKKEMRVWRAKCSELIEEAFRA 52 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV---------KRPDLDKLARAVLDGL 181 L + P++ +TF + P K+PD+D +A+LD + Sbjct: 53 EEL----MEGPLKIDVTFYILPPKYISSKKKLKEKLEAEEIFCDKKPDVDNYLKALLDSM 108 Query: 182 TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 T V++ DD QV + ARK+ + +P I Sbjct: 109 TGVIFKDDGQVVECRARKLYS---LKPRIEFEIKEM 141 >UniRef50_C0A6N6 Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A6N6_9BACT Length = 154 Score = 107 bits (266), Expect = 4e-22, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 60/163 (36%), Gaps = 26/163 (15%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 + + FV G P +G F + A E W+ RIA+A+ Sbjct: 2 NKPIVFFVSGDP--KGQPRPRAFARRVGNKFVARVFDAGTAEG------WKSRIAVAAKS 53 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK----------RPDLDKLARA 176 P PVR L F PRP ++ + +PD D LA+A Sbjct: 54 L-----TPAQPYTDPVRVRLHFFFPRPKAHFRTGKNAHLMRDDAPSYHIAKPDCDNLAKA 108 Query: 177 VLDGLT--DVVWLDDSQVDDLHARKVL-AELSQQPGCHMRIAS 216 VLD +T W DD QV L K + + PG ++ ++ Sbjct: 109 VLDAMTQLGGWWGDDQQVASLAVCKSYVSTIQLHPGVNISVSQ 151 >UniRef50_D0DND1 Holliday junction resolvase n=1 Tax=Lactobacillus jensenii SJ-7A-US RepID=D0DND1_9LACO Length = 135 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 25/154 (16%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + GKP + + + ++A +++ A Sbjct: 2 EISFSIDGKPFGKERPRPNRTGHGV--------------YTPERTKMYEYKVAQSASLAF 47 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-----PAVKRPDLDKLARAVLDGLTD 183 LD V S F + + K + PD D +A+AVLDG+ Sbjct: 48 FDE---PLDSDIRVCISAYFGVAKSDSKRKKQAKISGEIRPARTPDADNIAKAVLDGMNG 104 Query: 184 VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 VV+ DD QV +L K AE +P + + Sbjct: 105 VVYKDDKQVIELKVTKQYAE---KPRVDVSVEEI 135 >UniRef50_B2JU78 Endodeoxyribonuclease RusA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JU78_BURP8 Length = 180 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 17/144 (11%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILK---ESSAAVGPWRERIALASADAMLSAGLPVLDKKY 140 EG P G + + + + + + AM A P D Sbjct: 19 PATYRVSFTVEGVPVGKARARVTRNGTYTPKKTRRYEHDVRTVAMQAM-GALRPCRD--- 74 Query: 141 PVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLTDVVWLDDSQVD 193 V SL +P P K+ A V RPDLD +AV D L VV+ DDSQ+ Sbjct: 75 AVHVSLVVFLPVPERFSKAKRAAALAGLVYPVVRPDLDNFEKAVTDALNGVVYHDDSQIC 134 Query: 194 DLHARKVLAELSQQPGCHMRIASP 217 D+ K ++ P + AS Sbjct: 135 DVVKSKRYSDR---PRVVIECASI 155 >UniRef50_B1M2L8 Endodeoxyribonuclease RusA n=2 Tax=Rhizobiales RepID=B1M2L8_METRJ Length = 152 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 33/158 (20%), Positives = 51/158 (32%), Gaps = 23/158 (14%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 L + +PG P +G + I + + LA+ Sbjct: 2 SETLIIRLPGAPRGKGRHRAQLVHRG--------GVARIHSHPDQKTEAYESALRLAAGA 53 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKS-------YTPPAVKRPDLDKLARAVLD 179 M L P+ + MP P+ K +PD D +A+ V D Sbjct: 54 VMRGRAL----LTGPLEVRIFATMPIPASWSKRKRLDAIERRLRPTTKPDWDNIAK-VSD 108 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L VVW DD+ V D RK E P +++ + Sbjct: 109 ALNHVVWADDASVVDGLVRKFYGE---TPELVIQVTAL 143 >UniRef50_C0X7X1 Possible crossover junction endodeoxyribonuclease RusA n=37 Tax=root RepID=C0X7X1_ENTFA Length = 144 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 29/160 (18%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++R+ +P +P PQ F A G+ T + ++ V + Sbjct: 1 MEEMRIILPIEPKPQSRPRF-----ARRGNYVQTYEDSAMRAYKQKVKVY---------- 45 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGT-PKSYTPPAVK--------RPDLDKLARAV 177 L P L +K P+ A +TF + P VK +PDLD +AV Sbjct: 46 --LRKAKPKLIEKGPIMAHVTFYVQAPKSALSNKQKRLDVKLERKYCDKKPDLDNYFKAV 103 Query: 178 LDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 D +++ +D Q+ + +K+ + + + I S Sbjct: 104 TDAAEGILYKNDGQIAVMVCQKLYSMRQRT---EIEIMSL 140 >UniRef50_C9LU68 Endodeoxyribonuclease RusA n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LU68_9FIRM Length = 140 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 49/155 (31%), Gaps = 28/155 (18%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 V G P QG F +G P A ++ + + +A Sbjct: 5 TAVVLGDPVAQGRPRFSR-----QGGFVKAYDP-------AKSRDYKSYVRMIAAQH--- 49 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLTD 183 PV + + SL P G PK A V +PD+ + + V D L Sbjct: 50 --APVTPVEGAIEFSLRIYRAIPKGMPKYKREAAKEGRLRPVTKPDVSNVLKGVEDALKG 107 Query: 184 VVWLDDSQVDDLHA-RKVLAELSQQPGCHMRIASP 217 V + DDSQ+ K E P + + Sbjct: 108 VWYKDDSQIVGYGVLGKWYDER---PRIEIMMREL 139 >UniRef50_C7Y630 Holliday junction resolvase n=2 Tax=Lactobacillus crispatus RepID=C7Y630_9LACO Length = 161 Score = 104 bits (259), Expect = 3e-21, Method: Composition-based stats. Identities = 22/175 (12%), Positives = 44/175 (25%), Gaps = 42/175 (24%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +PG+P + + + A + + + + A Sbjct: 6 IKFVIPGEPQSKERPRTVRRAGGVRTY------------TPAKTHRYEDIVRYFAVYA-R 52 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP-------PAVKRPDLDKLARAVLDGLT 182 S+ P K K+PD D +A+ + DG+ Sbjct: 53 KEHKISEPINSQCGVSIKAYFGIPKSFSKKRRELCLKGKERPTKKPDSDNIAKIIFDGMN 112 Query: 183 ----------------DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 D + DD + K + P + + W D Sbjct: 113 PKMKLNKALHKKMVLQDGFYEDDKLIVTHSVEKWYS---MHPHVEVTVT---WED 161 >UniRef50_A8HKV5 Holliday junction resolvase n=1 Tax=Burkholderia pseudomallei Pasteur 52237 RepID=A8HKV5_BURPS Length = 166 Score = 104 bits (258), Expect = 3e-21, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 30/172 (17%) Query: 67 GRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASAD 126 ++ + +P +G + + + ++A + Sbjct: 2 NGEVHITLPFAAIGKGRPRVY----------------RGIASTPPKTRAYEHQVATLARA 45 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV-------KRPDLDKLARAVLD 179 AM L P+R + + P PK A+ +PD+D A+A+LD Sbjct: 46 AMRGR----LPFDGPIRVLIEIDVEIPKTWPKYRRADALAGRVWPSVKPDIDNCAKAILD 101 Query: 180 GLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIAAWQAAN 231 G+ + + DD+Q+ K A +Q + + +A + AN Sbjct: 102 GMNGIAYRDDTQIVIALLSKRYASDAQ---VRIAVEEIAGQTAQKSAQRRAN 150 >UniRef50_A4WB46 Endodeoxyribonuclease RusA n=7 Tax=Enterobacteriaceae RepID=A4WB46_ENT38 Length = 151 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 10/133 (7%) Query: 79 APQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDK 138 P + F F + + P + A W++R + A + + Sbjct: 12 IPPNHRAFPAFPRVVQIMKVYNILPMGKPRMTRADK-WKKRPEVMRYRAFCDHVRLLGVE 70 Query: 139 KYPVRASLTFVMPRPSGTPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVD 193 + +TF++P P K P +PD D L +A++D + + DD+ + Sbjct: 71 LPEANSHVTFILPMPQSWSKKKRLEYNGKPHQGKPDFDNLMKALMDAI----FEDDAHIW 126 Query: 194 DLHARKVLAELSQ 206 D K+ E + Sbjct: 127 DARVTKLWGEEGK 139 >UniRef50_A4E7B8 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7B8_9ACTN Length = 125 Score = 102 bits (253), Expect = 1e-20, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 6/112 (5%) Query: 117 RERIALASADAMLSAGLPV----LDKKYPVRASLTFVMPRPSGTPKSY-TPPAVKRPDLD 171 I A+ DAM A + + PV + P P PK + P +PD D Sbjct: 11 EAAIRDAALDAMREAYPELEGLLFPFRVPVAVRIDVYEPLPKSRPKRTVSEPNTFKPDAD 70 Query: 172 KLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEA 223 +A+ V+DG+ VVW DDSQV ++H K +P +++ GW D A Sbjct: 71 NIAKLVMDGMNGVVWGDDSQVAEVHVVKWPRRRGIEPHMDIQVYR-GWADPA 121 >UniRef50_A6QDW7 Endodeoxyribonuclease n=27 Tax=root RepID=A6QDW7_STAAE Length = 135 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 10/127 (7%) Query: 96 SPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG 155 +P G+ P + + V + A + A + +P L+ + ++ L F P Sbjct: 13 APMGSPRPRF-RNTGRFVQTYMPT-AYTNHKAYIQGQMPKLNLERALKIELDFYFPLLKS 70 Query: 156 TPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGC 210 K V +PD+D L + VLD VW DD+Q+ ++ + K +P Sbjct: 71 WSKKKKSEMVGQYKVTKPDIDNLIKTVLDACNGHVWKDDNQITEITSSKRY---GLEPKI 127 Query: 211 HMRIASP 217 MR+ Sbjct: 128 IMRVEEV 134 >UniRef50_B7FRX1 Endodeoxyribonuclease n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FRX1_PHATR Length = 386 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 22/163 (13%) Query: 65 NGGRQLRMFVPGKPAPQGSKD-FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 N ++ V G P P GF P + + S V +R+ + L Sbjct: 203 NVTGRVAFTVRGNPLPLRRHRTARGFVYNPSAKAQESFRDIV----SHMVTGFRDELHLL 258 Query: 124 SADAM-LSAGLPVLDKKYPVRASLTFVMPRPSGT-------------PKSYTPPAVKRP- 168 + ++AG+P + + ++ F M RP+ T P+V P Sbjct: 259 KGTHLPIAAGVPFFPEGQALVMTILFSMKRPNNHFVANRRGMLEDGCRLKATAPSVTSPT 318 Query: 169 --DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG 209 D+D LA+ VLD +++ DD QV LH KVL E G Sbjct: 319 RTDVDNLAKFVLDSCNGLLYEDDRQVISLHVTKVLDEQGTCLG 361 >UniRef50_Q4ZC15 ORF031 n=1 Tax=Staphylococcus phage EW RepID=Q4ZC15_9CAUD Length = 138 Score = 101 bits (251), Expect = 2e-20, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 29/143 (20%) Query: 76 GKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPV 135 G P F G +P ++ LP Sbjct: 18 GNPKGSSRPRFSGGGHTYMPAP------------------------YVKHKKFVADQLPH 53 Query: 136 LDKKYPVRASLTFVMPRPSGTPKSYTP-----PAVKRPDLDKLARAVLDGLTDVVWLDDS 190 L P+R ++ F PK P +PD+D L + +LD +++W+DD+ Sbjct: 54 LMIDKPIRLTVEFYFKPSKSWPKYKKEACIGNPHTIKPDIDNLLKTILDAGNNLLWVDDT 113 Query: 191 QVDDLHARKVLAELSQQPGCHMR 213 + ++ K AE ++ + Sbjct: 114 LIYEIRTFKKYAETARTVLTIIE 136 >UniRef50_Q044S5 Holliday junction resolvase n=8 Tax=root RepID=Q044S5_LACGA Length = 153 Score = 100 bits (250), Expect = 3e-20, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 46/171 (26%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G P + + + A + + + + ++ Sbjct: 2 RVNFTIEGPPIGKARPR----------------VTRTVTYTPAKTARYEDLVRYTAINSF 45 Query: 129 LSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-------PPAVKRPDLDKLARAVLDGL 181 + DK P+ + P K K+PD D + + ++DG+ Sbjct: 46 KG----IFDKDEPLDVKIMAYFEVPKSLSKKRKALCLANQELPTKKPDADNVGKIIMDGM 101 Query: 182 T----------------DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 V+ DD QV L +K AE + +RI Sbjct: 102 NPKMRRDKRLHKMVEVMRGVYHDDKQVTTLLVKKRYAERA---RVDVRIKR 149 >UniRef50_C7TBL4 Phage-related holliday junction resolvase n=4 Tax=Lactobacillaceae RepID=C7TBL4_LACRG Length = 113 Score = 100 bits (249), Expect = 4e-20, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 16/121 (13%) Query: 104 AILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG-------T 156 +++ + +++ L + P+R S+ Sbjct: 1 MGHAYDPTKSRNYKQHVKSVASE------LNIEPLSGPIRVSMEIYRQLQKSGSKALIRR 54 Query: 157 PKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 K +PD+D ++V D LT ++W DD+Q+ ++H K ++ QP + Sbjct: 55 KKEGKVRPTVKPDVDNYYKSVSDALTGILWEDDNQIVEIHVGKWYSD---QPRVEIEAEE 111 Query: 217 P 217 Sbjct: 112 I 112 >UniRef50_Q2W5Y8 Holliday junction resolvase n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W5Y8_MAGSA Length = 134 Score = 99.8 bits (247), Expect = 6e-20, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 53/150 (35%), Gaps = 27/150 (18%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + + +PG+ +G + + A IA + DAM Sbjct: 3 VVVTIPGEVTGKGRPRIWNGRAV----------------TPAKTRSKEGVIASLAMDAMG 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLT 182 PV ++ V+P + K A K+PDLD + + VLD + Sbjct: 47 GCD----PLTGPVLVTIEAVLPVATSWSKKRRAAALDGTEQPTKKPDLDNVVKLVLDAVN 102 Query: 183 DVVWLDDSQVDDLHARKVLAELSQQPGCHM 212 +V+ DD+Q+ + A K +Q + Sbjct: 103 GIVFADDAQITHIIASKRYGVFAQTTLTVV 132 >UniRef50_C2E9I5 Endodeoxyribonuclease RusA n=3 Tax=Firmicutes RepID=C2E9I5_9LACO Length = 159 Score = 98.7 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 6/134 (4%) Query: 85 DFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 F + + + + P + + A L P P+R Sbjct: 22 TFFVALEDVPTCTHQQKKVRVNRGIPIFYEPEKLKKTRALLMERLDEHKPDEPMHGPLRL 81 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAE 203 +T+ + +PD+D + + + D +T + W DD V L + K A+ Sbjct: 82 VVTWCFKKKGKHVDG--EYKTTKPDVDNMLKLLQDCMTRLGFWDDDRFVVSLISEKYWAD 139 Query: 204 LSQQPGCHMRIASP 217 + PG ++ I Sbjct: 140 V---PGIYIEIKEM 150 >UniRef50_B7S400 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7S400_PHATR Length = 157 Score = 98.7 bits (244), Expect = 1e-19, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 33/164 (20%) Query: 64 RNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALA 123 R+ GR + +++ GKP P + +P LKE S Sbjct: 10 RDTGRPIDVYIEGKPIPMPRPR---LGRGIWFNP----ATRQLKEFSKK----------- 51 Query: 124 SADAMLSAGLPVLDKKYPVRASLTFVMPRPSG-----------TPKSYTPPAVKRPDLDK 172 A+L V + + +L F + RP+ P P +PD+D Sbjct: 52 -LQALLPEDGVVFPRGECLEVNLFFYIRRPNSDYDGNKRINALKPGRANPFETVKPDIDN 110 Query: 173 LARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 LA+ LD + +V+ DDSQV L K+ G +++ + Sbjct: 111 LAKFTLDAMQGIVFHDDSQVVKLLVYKLRGNEG---GTRIKVRT 151 >UniRef50_B8I135 Endodeoxyribonuclease RusA n=4 Tax=Bacteria RepID=B8I135_CLOCE Length = 136 Score = 98.3 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 6/133 (4%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F K + ++ P + + A A A L+ +P PVR Sbjct: 8 FFLPMKKVPTVTHQEKQVKVVNGKPVFYEPDKLKAARAKLQAHLAKYVPDKPYTGPVRLM 67 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAEL 204 + + P +PD D L + + D +TD+ W DD+ V K AE+ Sbjct: 68 VKWCFPVTGKHKNG--EYKTSKPDTDNLQKLLKDVMTDLRFWKDDALVASEIVEKFWAEV 125 Query: 205 SQQPGCHMRIASP 217 PG + I Sbjct: 126 ---PGIFIAIEEL 135 >UniRef50_Q1CPT6 Phage protein n=8 Tax=root RepID=Q1CPT6_STRPB Length = 137 Score = 96.4 bits (238), Expect = 7e-19, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 6/133 (4%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F + + ++ P + A ++L+ +P P+R + Sbjct: 10 FFLPMDKIPTTTHQQKKVTVINGKPHFYEPESLKNARDKFTSLLAQHVPPSKLDGPIRLT 69 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAEL 204 + ++ P+ G+ +PD D L + + D +T++ W DD+QV K A+ Sbjct: 70 VKWLFPKIKGSTNG--QYKTTKPDTDNLQKLLKDCMTELGFWNDDAQVASEIIEKFWAD- 126 Query: 205 SQQPGCHMRIASP 217 G ++++ Sbjct: 127 --TVGIYVKVEEL 137 >UniRef50_B8C2M4 Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8C2M4_THAPS Length = 243 Score = 95.2 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 23/167 (13%) Query: 67 GRQLRMFVPGKPAPQGSKDF-MGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 + ++ + G P P GF P + ++L P + Sbjct: 75 TKGIKFTIRGNPKPLVRHRSSRGFMYNPSSAAQERFRDSLLSMLPRRYHP-----TILDD 129 Query: 126 DAMLSAGLPVLDKKYP----VRASLTFVMPRPSGTPKSYTP------------PAVKRPD 169 +M V + + + +TF + RP P R D Sbjct: 130 QSMDDGKAAVPNVLFSQHEFLAMEVTFRLKRPKNHFVGNKPGTGRMKPTAPGKFHNSRTD 189 Query: 170 LDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGC-HMRIA 215 +D L + V+D L ++++DD QV L A K+L G ++I Sbjct: 190 IDNLTKFVMDSLNGLLYVDDKQVVSLSAIKLLDSEGLCEGATDVKIT 236 >UniRef50_A6QIJ7 Endodeoxyribonuclease RusA n=22 Tax=root RepID=A6QIJ7_STAAE Length = 138 Score = 95.2 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 10/127 (7%) Query: 96 SPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG 155 +P G+ P + L +P L+ + ++ L F P Sbjct: 17 APMGSPRPRF-STKGRYAHTYMPT-KYTEHKKYLQNQMPKLNLENALKIELEFYFTPPKS 74 Query: 156 TPKSYT-----PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGC 210 K V +PD+D L + VLD + +W DD+Q+ ++ + K +P Sbjct: 75 WSKKKKTQAIGQLKVTKPDIDNLMKTVLDACNNYLWKDDNQIAEITSSKRY---GIEPKI 131 Query: 211 HMRIASP 217 +RI Sbjct: 132 IIRIEEI 138 >UniRef50_Q1CQ21 Phage protein n=15 Tax=root RepID=Q1CQ21_STRPD Length = 146 Score = 95.2 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 43/168 (25%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +P +P PQ F + A E WR+++ + Sbjct: 2 VKFTIPIEPKPQKRPRFSRWSGAYEDKDMMA---------------WRKQVTDYVKNNYE 46 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV------------------KRPDLD 171 P D ++ +TF + P K + A K+PDLD Sbjct: 47 G---PYFDDG--LKVDVTFYLKAPELVSKKPSERARDKTKQKYQDYINELLYVPKKPDLD 101 Query: 172 KLARAVLDGLTD--VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 L +AV D ++ VVW DD+ + + RK+ + P ++I Sbjct: 102 NLEKAVYDSISKSEVVWTDDNIIVEHTTRKLYS---PNPRIEVKINEL 146 >UniRef50_A4J1U6 Endodeoxyribonuclease RusA n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1U6_DESRM Length = 114 Score = 94.8 bits (234), Expect = 2e-18, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 44/149 (29%), Gaps = 37/149 (24%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 + VPG+P P+ G G ++ + + L +++ Sbjct: 1 MHFTVPGRPVPKYRPR------------VGKHGNIYTPQN---CREYERTVGLYASNVF- 44 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 PV + F R G DLD +A+ DGL + W DD Sbjct: 45 -----PQPLTGPVTLGVKFYFSRRPG-------------DLDNYVKAISDGLNGIAWQDD 86 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIASPG 218 QV L A + + G Sbjct: 87 RQVVKLFASLKRGSPE---RAEVVVQRIG 112 >UniRef50_Q0TSJ9 Endodeoxyribonuclease RusA family protein n=3 Tax=Clostridium RepID=Q0TSJ9_CLOP1 Length = 128 Score = 93.7 bits (231), Expect = 5e-18, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 10/123 (8%) Query: 92 APEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMP 151 G G P + + A P ++ I + ++A + Sbjct: 3 VVTGKIRGKARPRVCR--GHAFTP-KDTIEYEKLVRECYKKQDGRYLEGAIKALIIAYYK 59 Query: 152 RPSGTPKSY-------TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAEL 204 P K K+PD D + + +LD L V + DDSQ+ DL +K E Sbjct: 60 IPKSYTKKRVQVIRDGLEKPTKKPDADNIGKVILDSLNGVAYKDDSQIIDLRIKKEYTEE 119 Query: 205 SQQ 207 ++ Sbjct: 120 LER 122 >UniRef50_C4F8E1 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4F8E1_9ACTN Length = 152 Score = 93.3 bits (230), Expect = 6e-18, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 8/119 (6%) Query: 94 EGSPPGTRGPAILKESSAAVGPWRERIALASA--DAMLSAGLPVLDKKYPVRASLTFVMP 151 G P + S P + + A + + + +G + PV + + Sbjct: 17 PAEIVGKGRPRFTR-SGRTYTPRKTKRAELAIRDEFLRVSGDRWAKFRGPVSVHIIYGRE 75 Query: 152 RPSGTPKSYTPPA-VKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPG 209 PK + A +PDLD + VLD L + ++DDSQV ++ K +++PG Sbjct: 76 LAKSNPKFWAGRADTGKPDLDNCGKLVLDALNGIAFMDDSQVVNMTIAK----SARRPG 130 >UniRef50_UPI0001C3762E endodeoxyribonuclease RusA n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C3762E Length = 131 Score = 92.1 bits (227), Expect = 1e-17, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 41/131 (31%), Gaps = 6/131 (4%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 F + + A A LS P ++ + Sbjct: 5 FMNMIPPTSTQQERGCTIINGKRKYYDRGNSDAHQKLKAYLSQHRPGAPLTGALQVVTKW 64 Query: 149 VMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQ 207 P + P +PD D L +A D +T++ W DD Q+ K A Q+ Sbjct: 65 CFPIKAKHHDG--EPYTNKPDADNLCKAFYDIMTELGYWKDDKQIYSSITEKFWA---QR 119 Query: 208 PGCHMRIASPG 218 PG +++I Sbjct: 120 PGIYVKIEEVK 130 >UniRef50_A4W6Z5 Endodeoxyribonuclease RusA n=3 Tax=Enterobacteriaceae RepID=A4W6Z5_ENT38 Length = 119 Score = 91.0 bits (224), Expect = 3e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 10/116 (8%) Query: 96 SPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSG 155 P + A W+ R A+ A A +TFVMP P+ Sbjct: 1 MRTYDITPLGKPRMTRADK-WKTRPAVMRYRAFCDEARLRRIHLPESGAHVTFVMPMPTS 59 Query: 156 TPKSYTP-----PAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 K P +PD D + +A++D L + DDS V D K+ E Q Sbjct: 60 WSKKKREQFDGKPHQSKPDCDNMLKALMDAL----FDDDSSVWDCRITKLWGEKGQ 111 >UniRef50_A7A2M1 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A2M1_BIFAD Length = 173 Score = 90.2 bits (222), Expect = 6e-17, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 43/153 (28%), Gaps = 44/153 (28%) Query: 71 RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLS 130 +PG+P +G F G++ + E + M Sbjct: 7 DFDIPGEPVAKGRPRFYGYRAV----------------TPQHTRDAEELVRN--QFHMFY 48 Query: 131 AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDS 190 LD V L F R +PDLD L + V D L + ++DD Sbjct: 49 PHAEPLDGD--VMMILMFYKGRH------------GKPDLDNLEKLVKDALNGLAYVDDQ 94 Query: 191 QVDDLHARKVLAELSQQPGCHMRIASPGWGDEA 223 QV + + WG A Sbjct: 95 QVKLTLCAMLEPD------------RMAWGQRA 115 >UniRef50_C7JFF8 Holliday junction resolvase RusA n=16 Tax=Acetobacter pasteurianus RepID=C7JFF8_ACEP3 Length = 151 Score = 89.8 bits (221), Expect = 6e-17, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 9/113 (7%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 ++ G P + + A+ G P L P+ SL Sbjct: 40 YRLTIPGLLRAKGRPRFGNGRTFTYAKTVQAEKHIQRHAIEQIGKPCL--TGPLHVSLMI 97 Query: 149 VMPRPSGTPKSYTPPA-------VKRPDLDKLARAVLDGLTDVVWLDDSQVDD 194 + P + T A RPD+D + D L + W DD+Q+ D Sbjct: 98 NIAPPPSWSRKKTADALAGRILPTSRPDIDNQMKTAADALNGIAWKDDAQIVD 150 >UniRef50_B1BFH9 Endodeoxyribonuclease RusA family protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BFH9_CLOPE Length = 131 Score = 89.1 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 12/133 (9%) Query: 92 APEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMP 151 G G P + + A P ++ + + ++ + Sbjct: 4 VVTGKIRGKARPRVCR--GHAFTP-KDTVQYEKLVRDCYQEQDGRYLEGSIKVLIVAYYK 60 Query: 152 RPSGTPKSY-------TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAEL 204 P K K+PD D + + +LD L + + DD+ V D K E Sbjct: 61 IPKSYSKKRVQAIRDGLEKPRKKPDADNIGKIILDSLNGIAYKDDAYVADFRVIKEYTEE 120 Query: 205 SQQPGCHMRIASP 217 + ++ Sbjct: 121 LE--RVEFELSEV 131 >UniRef50_C8WLT7 Endodeoxyribonuclease RusA n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WLT7_EGGLE Length = 141 Score = 88.7 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 10/137 (7%) Query: 90 KKAPEGSPPGTRGPAILKESSAAVGPWRER-------IALASADAMLSAGLPVLDKKYPV 142 ++ P R + PW+ + A + L + PV Sbjct: 3 RQTLINFVPVKRRVKLEFRGKCTSCPWKLKGCHVYTPQATIDEERALGQAYKGPRHEGPV 62 Query: 143 RASLTFVMPRPSGTPKSYT-PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVL 201 + P PK P PD+D +A+AVLDGL + + DD QV +LH K Sbjct: 63 SVRIDVFRVLPGSRPKRVLGEPDTMTPDIDNIAKAVLDGLNGIAYDDDKQVVELHVYKH- 121 Query: 202 AELSQQPGCHMRIASPG 218 + ++ G +RI+ G Sbjct: 122 -DRERRVGDSVRISVEG 137 >UniRef50_C9Z8Y4 Putative Holliday junction resolvase n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Y4_STRSW Length = 161 Score = 87.9 bits (216), Expect = 3e-16, Method: Composition-based stats. Identities = 55/166 (33%), Positives = 64/166 (38%), Gaps = 29/166 (17%) Query: 66 GGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASA 125 L + V G PAPQGSK+ L ESSAAV PWRE + A+ Sbjct: 2 TAPALLLTVYGTPAPQGSKN--------------RNRAGALYESSAAVKPWREAVKTAAL 47 Query: 126 DAMLSAGLPVLDKKYPVRASLTFVMPRPS---------GTPKSYTPP-AVKRPDLDKLAR 175 DA L PV F + RP G K P PDLDKL R Sbjct: 48 DA-LHHDDGWTALSCPVWLDAQFTLRRPKHHYGTGRNAGRLKPSAPAYPTGTPDLDKLVR 106 Query: 176 AVLDGLTDV-VWLDDSQVDDLHARKVL---AELSQQPGCHMRIASP 217 D L D V DDS V L A KV + + PG +R+ Sbjct: 107 CTQDALKDAGVLADDSVVASLSASKVYVLWGDALRTPGAVIRVWRL 152 >UniRef50_C0A3T9 Phage protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A3T9_9BACT Length = 151 Score = 84.0 bits (206), Expect = 4e-15, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 9/99 (9%) Query: 124 SADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTP----PAVKRPDLDKLARAVLD 179 + +L P VR LTF P + K + P +PD D A+ D Sbjct: 47 AYCTLLVTHRPPQPLAGFVRCHLTFTWPWLAKHTKKHRAFGWYPHGGKPDWDNAAKLFCD 106 Query: 180 GLTDVVW--LDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 L V + DD+Q+ D K + PG +R++ Sbjct: 107 CLKTVGFFQRDDAQIFDGRLIKGHGDR---PGIRVRLSE 142 >UniRef50_B7GQZ5 Endodeoxyribonuclease RusA n=2 Tax=Bifidobacterium longum subsp. infantis RepID=B7GQZ5_BIFLI Length = 142 Score = 82.1 bits (201), Expect = 1e-14, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 46/126 (36%), Gaps = 16/126 (12%) Query: 98 PGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVL-DKKYPVRASLTFVMPRPSGT 156 P + + A+ P R A A P + PVR F M Sbjct: 1 MPKGRPRV--YNGHAMTPKRTVRAEERLFAEFRLKYPQAKPYQCPVRLEAEFWM------ 52 Query: 157 PKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 RPDLD L + VLD L V ++DD+QV + HA K + ++ G R Sbjct: 53 ------SHRGRPDLDNLLKLVLDSLNGVAYVDDAQVVESHACKRMPDMWVY-GAKGRYRR 105 Query: 217 PGWGDE 222 GD Sbjct: 106 RKSGDP 111 >UniRef50_Q38100 Crossover junction endodeoxyribonuclease rusA n=13 Tax=root RepID=RUSA_BPR1T Length = 131 Score = 81.7 bits (200), Expect = 2e-14, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%) Query: 123 ASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT 182 A M + +K P++ S+TF K + RPDLD L + + D +T Sbjct: 41 LKAQLMKNKPKECFEKNVPLKLSVTFFYAI--KQKKRWWQWKTSRPDLDNLMKNLQDYMT 98 Query: 183 DV-VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 + + DDSQ+ L A+KV E + + I Sbjct: 99 KLRYYSDDSQIVWLEAKKVNDEKN---RIEIEITEV 131 >UniRef50_C2LH12 Endodeoxyribonuclease RusA n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LH12_PROMI Length = 131 Score = 81.4 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%) Query: 115 PWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT-----PPAVKRPD 169 W++R + A A LTFV+P P K P +RPD Sbjct: 21 AWKKRPVVVKYHAFCDEMKANRFTLPESGAHLTFVIPMPKSWSKKKRIEMNGKPHQQRPD 80 Query: 170 LDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQ 206 +D L +AV+D + + +D +V ++ A K+ E + Sbjct: 81 VDNLIKAVMDAI----FDEDCRVWNISASKLWGEQGK 113 >UniRef50_UPI00016A4110 hypothetical protein BoklE_20745 n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A4110 Length = 107 Score = 76.0 bits (185), Expect = 9e-13, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 6/99 (6%) Query: 121 ALASADAMLSAGLPVLDKKYPVRASLTF-VMPRPSGTPKSYTPPAVKRPDLDKLARAVLD 179 A ++A LP LD +Y + + +P K TP D+D A+ V+D Sbjct: 12 AYKVYQKAIAAALPKLDSQYTGELEVILEFVCKPIAKSKFTTPMG----DVDNFAKGVMD 67 Query: 180 GLTD-VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 LTD W DD Q+ L RK L + P + I Sbjct: 68 TLTDEGWWEDDRQIMQLAVRKRFPALGEDPHIRIYIREL 106 >UniRef50_Q1QRE3 Endodeoxyribonuclease RusA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QRE3_NITHX Length = 112 Score = 74.0 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 22/117 (18%) Query: 101 RGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY 160 RG L + A+++ A + PV L + + Sbjct: 18 RGRRFLTTDGKRT---KLLNAVSARKQYRGA-----PLEGPVCVELQVYFKSKASS---- 65 Query: 161 TPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 D+D + +A LD LT ++W DD Q+ +LHA K+ + +P + ++ Sbjct: 66 --------DIDNVCKAALDSLTGILWKDDRQIQELHAYKL--QDKLRPRIELTLSQL 112 >UniRef50_B9MNI2 Endodeoxyribonuclease RusA n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MNI2_ANATD Length = 124 Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 37/147 (25%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ + KP P+ G G + E I + + Sbjct: 4 FKIEIQTKPVPKARPR------------LGANGRMYTP---KETREFEELIGWTTRSVVR 48 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDD 189 + PV+ ++ R D D +A+A+LDGL+ V ++DD Sbjct: 49 K------PIEKPVKVNIDVYSK--------------TRADFDNIAKAILDGLSGVAFIDD 88 Query: 190 SQVDDLHARKVLAELSQQPGCHMRIAS 216 QV DL RK+ + I Sbjct: 89 RQVVDLRIRKL--TPVNCEKIVISIRE 113 >UniRef50_B5V5C5 Crossover junction endodeoxyribonuclease RusA superfamily n=1 Tax=Bacillus cereus H3081.97 RepID=B5V5C5_BACCE Length = 135 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 16/94 (17%) Query: 107 KESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK 166 ++ + W+ R+ A+ + P ++ S+T+ Sbjct: 17 TKNRNRLQEWKARVRSAAELYWPTEDSP---SDKQLKLSITYYYE-------------NT 60 Query: 167 RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 PD+D + + + D L +V+ DD Q+ D K Sbjct: 61 SPDVDNIIKPIQDALVGLVYNDDDQIIDTSCGKR 94 >UniRef50_Q3YZH8 Crossover junction endodeoxyribonuclease rusA n=53 Tax=root RepID=RUSA_SHISS Length = 120 Score = 69.0 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 43/127 (33%), Gaps = 20/127 (15%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P + R SA +R+ + +AML GL PV+ + MP Sbjct: 11 PPSNNRYYRHNRGRTHISAEGQAYRDNVTRIIKNAMLDIGL-----AMPVKIRIECHMPD 65 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCH 211 DLD L +A D LT WLDD+QV D K+ Sbjct: 66 RRRR------------DLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGG--RLE 111 Query: 212 MRIASPG 218 + I G Sbjct: 112 LTITEMG 118 >UniRef50_A1HQ91 Putative uncharacterized protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQ91_9FIRM Length = 121 Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 9/39 (23%), Positives = 19/39 (48%) Query: 167 RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELS 205 +PD+D + + D L + +LD+ Q+ K + + Sbjct: 59 KPDIDNIMKITADALNGLAYLDNKQIISCTVGKYYSNVQ 97 >UniRef50_C5B534 Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B534_METEA Length = 225 Score = 60.6 bits (145), Expect = 5e-08, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 42/150 (28%), Gaps = 27/150 (18%) Query: 68 RQLRMFVPGKPAPQGSKD------------------FMGFKKAPEGSPPGTRGPAILKES 109 ++ V +P P+ F G T + Sbjct: 53 PEISFAVSLEPRPKERPRTFLPPAELARAFAAAQGNPNRFLSIVRGGDEDT-RIRHHTYT 111 Query: 110 SAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPD 169 + + +A A AM P+ SL P D Sbjct: 112 PKETAAFESAVRMAGAAAMRGRE--------PIAVSLGIDAILAFDGDAGLWPTDNTDGD 163 Query: 170 LDKLARAVLDGLTDVVWLDDSQVDDLHARK 199 LD L +AVLD + VV+ DD V ++ K Sbjct: 164 LDNLVKAVLDAVNGVVFKDDRLVVEMRLAK 193 >UniRef50_B1XIH3 Putative uncharacterized protein n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XIH3_SYNP2 Length = 135 Score = 55.2 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 21/115 (18%) Query: 86 FMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRAS 145 F + +G P + + W+ + + S + Sbjct: 2 FSRLEFIVDGPPVSQQTRRR-----ERLRDWKRVVRQEAEKYWSSGQK---ATTGLIMLQ 53 Query: 146 LTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 +T+ D+D + + + D + +V++DD QV D+ RK Sbjct: 54 ITYFY-------------DSVAIDVDNIVKPIQDAIIGLVYIDDDQVTDVLVRKR 95 >UniRef50_B0T4W4 Endodeoxyribonuclease RusA n=7 Tax=Caulobacteraceae RepID=B0T4W4_CAUSK Length = 132 Score = 54.0 bits (128), Expect = 4e-06, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 18/130 (13%) Query: 88 GFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLT 147 G ++ + ++ I G ++ V + Sbjct: 10 THHGKVRAREDGGELTLVVDGLTTQAKYYKPLIYEFFRKVWR--GSRPAWGEFSVEIGME 67 Query: 148 FVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQ 207 FV P DLD LA+A+LD + + DD+QV L + AE Sbjct: 68 FVGDPPWM-------------DLDNLAKALLDAIKGYAFHDDAQVARLLVERRPAERE-- 112 Query: 208 PGCHMRIASP 217 + + Sbjct: 113 -RIIIVVRKL 121 >UniRef50_A0YIY0 Putative uncharacterized protein n=2 Tax=Oscillatoriales RepID=A0YIY0_9CYAN Length = 322 Score = 53.6 bits (127), Expect = 5e-06, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 39/160 (24%), Gaps = 32/160 (20%) Query: 62 YERNGGRQ-LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERI 120 YE N +R +PG P+ WR R Sbjct: 191 YEPNSTENLVRFCIPGTVVPKARPRVTSNG----------------TYMPNRYREWRNRA 234 Query: 121 ALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDG 180 + M V SL F DLD +A A LD Sbjct: 235 EIELYRQMSQFHSTHKFPLQKVAVSLRFF------------GNHRTNSDLDNMAGACLDA 282 Query: 181 LT---DVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 LT V +DD +++ G + I Sbjct: 283 LTLNGAGVLMDDRLSCLPRLTVEYVSGTKETGVWIEIQPL 322 >UniRef50_C3X8S6 Endodeoxyribonuclease RusA n=2 Tax=Oxalobacter formigenes RepID=C3X8S6_OXAFO Length = 222 Score = 53.6 bits (127), Expect = 6e-06, Method: Composition-based stats. Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 14/148 (9%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVR 143 + + P + S A ++ R+ A+ +A + V Sbjct: 7 PYPISANRYWRTYLPRGCAAPVTTVSPEA-RAYQNRVRRAAREA-----GVLCPFPGRVA 60 Query: 144 ASLTFVMPRPSGTPKS------YTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHA 197 S RP + +V+ DLD + + D + +V+ +D+ + + Sbjct: 61 VSYVLYPKRPLDWVRRQRMNPARWDDSVQCMDLDNAQKVLFDAMEGIVYENDNLIRRIEG 120 Query: 198 RKVLAELSQQPGCHMRIASPGWGDEAIA 225 + + + + + E +A Sbjct: 121 ERAVPD--GDARVLVTVEPIEDLVEPVA 146 >UniRef50_B6XBQ4 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=B6XBQ4_9ENTR Length = 124 Score = 53.2 bits (126), Expect = 6e-06, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 41/131 (31%), Gaps = 21/131 (16%) Query: 89 FKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTF 148 F + +G ++ E ASA A + LP S+T Sbjct: 11 FPPSVNTYWRNLKGKTLISEKGRRYR--------ASAIAAIYQQLPRRSDAITGIVSVTV 62 Query: 149 VMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQ 207 M P+ + D+D +A D LT +W DD QV ++ + Sbjct: 63 KMFPPTSHRR----------DIDNYLKAPFDALTHANIWKDDDQVKHADIA--WCDVVKG 110 Query: 208 PGCHMRIASPG 218 + I G Sbjct: 111 GRFEITIRPIG 121 >UniRef50_D2U1C7 Phage V crossover junction endodeoxyribonuclease n=3 Tax=Arsenophonus nasoniae RepID=D2U1C7_9ENTR Length = 129 Score = 53.2 bits (126), Expect = 7e-06, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 15/108 (13%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P R + S ++ A + +G + + V L Sbjct: 12 PPSVNTYWRHNSKHTYLSNKAKAFKATTAKIVNEMRQKSGCQKFEGEVSVLMQLYL---- 67 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARK 199 P + D+D ++ VLD LT VW DDSQV + K Sbjct: 68 ----------PNKIKRDVDNYSKGVLDSLTGADVWNDDSQVRVMTIEK 105 >UniRef50_B2U8I2 Endodeoxyribonuclease RusA n=4 Tax=Betaproteobacteria RepID=B2U8I2_RALPJ Length = 158 Score = 52.5 bits (124), Expect = 1e-05, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 45/136 (33%), Gaps = 14/136 (10%) Query: 94 EGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRP 153 P + + + ++E++A + A + V+ T RP Sbjct: 21 RIVKPKSGPSFVSTYVTPEAKAYKEQVAWLAKSAGVRE-----PLACRVQIDYTLYPKRP 75 Query: 154 SGTPKSYTPPA------VKRPDLDKLARAVLDGLTDVVWLDDS-QVDDLHARKVLAELSQ 206 + V+ DLD + +LD L VV DD QV +HA + + + Sbjct: 76 QDWERRVAKDPLQWDNTVQCIDLDNAQKVLLDALKGVVIQDDGWQVRRIHAERGVPD--G 133 Query: 207 QPGCHMRIASPGWGDE 222 + + + + Sbjct: 134 EARIVVTVTTLLEESP 149 >UniRef50_Q0AN00 Endodeoxyribonuclease RusA n=2 Tax=Hyphomonadaceae RepID=Q0AN00_MARMM Length = 112 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 18/112 (16%) Query: 106 LKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAV 165 + + ++ I + + PA Sbjct: 10 VDAVTTQTRRFKSLIGEFFRLEFKRTQPKWGPYEVCIEV---------------ARDPAS 54 Query: 166 KRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 D+D +A+AVLD LT VV+ DDSQV+ L +V + P + Sbjct: 55 PDHDVDGVAKAVLDALTGVVFHDDSQVERLLVTRVEGDR---PRIAVTARPM 103 >UniRef50_C9L7A6 Crossover junction endodeoxyribonuclease RusA family protein n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L7A6_RUMHA Length = 192 Score = 51.3 bits (121), Expect = 3e-05, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 26/155 (16%) Query: 68 RQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPW-RERIALASAD 126 +L P P ++ ++ + P + + + + I L + Sbjct: 3 EKLVFT---SPIPPSVNHYLAYRTIIKNGK-----PMAMSYKTKEAKDYQKNIIELIKKE 54 Query: 127 AMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD--V 184 + +K + F PR D + + + D +TD + Sbjct: 55 VEKQRWVKSDNKFQHYYMDVVFYFPR-------------VDMDANNYFKCLADAITDTEL 101 Query: 185 VWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGW 219 VW+DD+Q+ + P + I + Sbjct: 102 VWIDDTQLCERVMGIYYDNK--NPRMEIEIKPVNY 134 >UniRef50_C3WYQ9 Predicted protein n=1 Tax=Fusobacterium sp. 7_1 RepID=C3WYQ9_9FUSO Length = 117 Score = 50.5 bits (119), Expect = 4e-05, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 36/135 (26%), Gaps = 20/135 (14%) Query: 83 SKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPV 142 + F K + + S A +R+ + + V Sbjct: 2 KQRFEIPYKPDSMNTHWRIAKNGGQYLSKAGREFRDNVQNYIKL------YKYKTYEKSV 55 Query: 143 RASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLA 202 + L DLD + +LD +++DD Q+D + A K + Sbjct: 56 KVKLDLYFADKRTR------------DLDNYFKGILDSFKGFLYVDDKQIDKIEATKHIG 103 Query: 203 ELSQQPGCHMRIASP 217 + + Sbjct: 104 AGKNY--FIIEVEEL 116 >UniRef50_Q2RLE3 Putative uncharacterized protein n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLE3_MOOTA Length = 98 Score = 50.5 bits (119), Expect = 5e-05, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 164 AVKRP-DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 A P DLD +++ D L + WLDD QV + KV+ + + +A Sbjct: 41 ATHPPGDLDNYIKSLADSLNGIAWLDDRQVARMEVEKVVVVEGDE-RAEVEVAP 93 >UniRef50_C9MV65 Endodeoxyribonuclease RusA n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MV65_9FUSO Length = 109 Score = 50.2 bits (118), Expect = 6e-05, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 19/112 (16%) Query: 107 KESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVK 166 + S + E ++ + + Sbjct: 16 RYKSKRGKEFEEIAKYELKKQYKGEVTKKR-----LKVEIWLYFKTRAKR---------- 60 Query: 167 RPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 D+D +A+LD L +V DD +DDL K+ + ++ I G Sbjct: 61 --DIDNYNKAILDSLKGIVIEDDELIDDLAVHKIKG--HGKDKVYIEILERG 108 >UniRef50_B3SZS6 Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_48F7 RepID=B3SZS6_9ZZZZ Length = 119 Score = 49.8 bits (117), Expect = 7e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 13/71 (18%) Query: 158 KSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 K P +PDLD + + +D L DD+ V + A K +E QPG + + Sbjct: 57 KHVGKPCQSKPDLDNVLKGFMDALR----TDDASVYAVSASKFWSE---QPGVVLSVRV- 108 Query: 218 GWGDEAIAAWQ 228 AW+ Sbjct: 109 -----PAPAWR 114 >UniRef50_Q2NSA8 Phage holiday-junction resolvase n=2 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSA8_SODGM Length = 124 Score = 49.0 bits (115), Expect = 1e-04, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 24/122 (19%) Query: 78 PAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLD 137 P P G+ +AP G ++ E A A A+ + Sbjct: 6 PFP---PSVNGYWRAPNRGKLA--GRHLVSERGRRYR------AEAVAEILEQLRGMPQP 54 Query: 138 KKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDG-LTDVVWLDDSQVDDLH 196 K + S+ F P K DLD +A+ D + +W+DDSQ+ L Sbjct: 55 VKGDLAVSVMFC---PPSRAKR---------DLDNYFKALFDSVINAGIWIDDSQIKKLE 102 Query: 197 AR 198 A Sbjct: 103 AE 104 >UniRef50_D1N7I2 Endodeoxyribonuclease RusA n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7I2_9BACT Length = 132 Score = 48.2 bits (113), Expect = 2e-04, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 20/124 (16%) Query: 93 PEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPR 152 P + R S +R+ + D + + + F P Sbjct: 10 PPSNNTYYRHVGHRTLLSRKAHAYRKAVLGMLKD------RVLPEFTGEIELYAEFYPPD 63 Query: 153 PSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCH 211 K DLD L + + D L ++ DDSQ+ L K + Sbjct: 64 -----KRKR-------DLDNLLKGLQDTLQHAGLFRDDSQIVHLDIVKKEPHRPDG-RAY 110 Query: 212 MRIA 215 +RI Sbjct: 111 VRIK 114 >UniRef50_C5S0Z1 Endodeoxyribonuclease RusA n=1 Tax=Actinobacillus minor NM305 RepID=C5S0Z1_9PAST Length = 114 Score = 47.8 bits (112), Expect = 3e-04, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 23/118 (19%) Query: 100 TRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKS 159 +A +++ + + + P V + Sbjct: 17 KHTRNGKHYITAKGKTFQQEVRWLTRN------RPKFI--GKVLLEVDIY---------- 58 Query: 160 YTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 PP ++ D+D + +A+LD LT+ V +DDS V L A K+ + + +RI Sbjct: 59 --PPDNRKRDIDNIFKALLDALTNAGVIIDDSFVYKLVAEKLPSIKGGK--VIVRIKE 112 >UniRef50_Q0BY13 RusA family protein n=2 Tax=Alphaproteobacteria RepID=Q0BY13_HYPNA Length = 118 Score = 47.5 bits (111), Expect = 3e-04, Method: Composition-based stats. Identities = 17/36 (47%), Positives = 21/36 (58%) Query: 169 DLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAEL 204 DLD LA+A+LD L V+ DD QV L + AE Sbjct: 71 DLDNLAKALLDSLCGNVFEDDHQVARLLVERRAAER 106 >UniRef50_D1DX10 Endodeoxyribonuclease RusA (Fragment) n=16 Tax=Neisseria gonorrhoeae RepID=D1DX10_NEIGO Length = 178 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 40/143 (27%), Gaps = 12/143 (8%) Query: 75 PGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLP 134 P +G + P + R SA +RE + + A G Sbjct: 48 PVDATGRGMRVTRLILPYPVSANRYWRIWRNRAVRSAEAAAYRETVRRIAQGA----GAM 103 Query: 135 VLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDD 194 + V L P V DLD + LD L V + +D QV Sbjct: 104 PSEGAVAVYVRL-----IPKANKDGGANKTVI--DLDNALKVTLDALQGVAYHNDRQVRR 156 Query: 195 LHARKVLAELSQQPGCHMRIASP 217 + A E G + + Sbjct: 157 IAAD-YADEPVAGGGLAVEVGEL 178 >UniRef50_C5VUH2 Crossover junction endodeoxyribonuclease RusA family n=2 Tax=Viruses RepID=C5VUH2_9VIRU Length = 215 Score = 47.5 bits (111), Expect = 4e-04, Method: Composition-based stats. Identities = 20/161 (12%), Positives = 44/161 (27%), Gaps = 21/161 (13%) Query: 59 RVTYERNGGRQL-RMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWR 117 R + N + + ++ P P S + + + G + P + ++ ++ Sbjct: 10 RCCFISNTKKPILKLVSPIPP----SVNHYLAPRPFIMTKNGKKVPMVTMYETSEAKKYK 65 Query: 118 ER-IALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARA 176 + I + K F R D + Sbjct: 66 KEFIKYVKEEVRKQKWDITCTKDKHFYFDTIFHFDRVDK-------------DEQNYYKC 112 Query: 177 VLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 + D L + ++DD + K+ S P + I Sbjct: 113 LCDALNGLAYIDDRNIL-TRCFKI-DYDSINPRIEITIHPV 151 >UniRef50_Q07I62 Endodeoxyribonuclease RusA n=2 Tax=Rhodopseudomonas palustris RepID=Q07I62_RHOP5 Length = 138 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 18/32 (56%) Query: 169 DLDKLARAVLDGLTDVVWLDDSQVDDLHARKV 200 D+D + + +LD L ++ DD QV L +K Sbjct: 67 DIDNIVKPILDALGRHIYRDDKQVYRLVVQKF 98 >UniRef50_Q2NV05 Putative phage endonuclease n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NV05_SODGM Length = 119 Score = 45.5 bits (106), Expect = 0.001, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Query: 162 PPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHA 197 PP ++ DLD L +A LD L V+ DD+Q+ DLH Sbjct: 63 PPDRRKRDLDNLLKAPLDALQHAGVYEDDNQIIDLHI 99 >UniRef50_C9M6T7 Putative endonuclease n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M6T7_9BACT Length = 141 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 34/165 (20%) Query: 55 ALSARVTYERNGGRQLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVG 114 +L + ++ + + +PG P P + ++ +A Sbjct: 8 SLRKKEVWKIENNKIFEIEIPGLP--------------PTVNHFYRTSRTGVRYKTAEGK 53 Query: 115 PWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLA 174 W+ + L M +A V + T K D+D Sbjct: 54 AWQAGVVLL----MRTANKNYQAYAGEVGLYIDL-----MSTDKRRW-------DVDNRI 97 Query: 175 RAVLDGL-TDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPG 218 +A+ D L + V +D+QV +LHAR+V + + ++ I Sbjct: 98 KALQDCLASAGVIKNDTQVIELHARRVHGDDEKT---NVMIYKLA 139 >UniRef50_C4X6W2 Bacteriophage V crossover junction endodeoxyribonuclease n=5 Tax=Enterobacteriaceae RepID=C4X6W2_KLEPN Length = 132 Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 29/147 (19%) Query: 70 LRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAML 129 ++ +P P + +G ++ E+ ++ + A + + Sbjct: 1 MKFILPFPP--------SVNSYWRSPNKGTAKGKLLVSEAGRK---FKHAVRAAIIEQLK 49 Query: 130 SAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLT-DVVWLD 188 + P P + P DLD +A+ D LT +W D Sbjct: 50 AVPKP---SASPAEVVIVLHPPDYRRR------------DLDNYNKALFDALTYAGIWED 94 Query: 189 DSQVDDLHARKVLAELSQQPGCHMRIA 215 DSQV + ++ + I Sbjct: 95 DSQVKRMTIE--WGGNAKGGRVEITIT 119 >UniRef50_A6L486 Putative uncharacterized protein n=1 Tax=Bacteroides vulgatus ATCC 8482 RepID=A6L486_BACV8 Length = 124 Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 13/83 (15%) Query: 148 FVMPRPSG--------TPKSYTPPAVKRPDLDKLARAVLDG--LTDVVWLDDSQVDDLHA 197 F + P ++ KRPDLD + +LD +T + +D Q + Sbjct: 45 FYIQCPERGRMIEGYFRLRAKVYYNSKRPDLDNSLKILLDCLQMTGTI-KNDRQCVYIEI 103 Query: 198 RKVLAELSQQPGCHMRIASPGWG 220 K + +P I +G Sbjct: 104 EKFVDRK--EPRVEYEITPVEFG 124 >UniRef50_B9CN52 Phage protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CN52_9ACTN Length = 72 Score = 45.1 bits (105), Expect = 0.002, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 4/57 (7%) Query: 162 PPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHMRIASP 217 P +PD+ + + D L V DD + D H K A + G + Sbjct: 7 EPHTGKPDMSNMLKTFEDCLVRCSVIDDDRGIIDEHLSKGYA---KTYGIFFKAEEI 60 >UniRef50_B4TRD0 Bacteriophage V crossover junction endodeoxyribonuclease n=34 Tax=root RepID=B4TRD0_SALSV Length = 129 Score = 44.0 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 9/119 (7%) Query: 105 ILKESSAAVGPWR--ERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT- 161 IL + WR + A A + +AG +P+P+ P S Sbjct: 4 ILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSTACAAIVEQLRRLPKPTSAPASVEI 63 Query: 162 ---PPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHMRIAS 216 PP + DLD +A+ D LT VW DDSQV + + + + I+ Sbjct: 64 VLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRMLVE--WGPVIPEGKVEITISK 120 >UniRef50_B2JL34 Endodeoxyribonuclease RusA n=2 Tax=Burkholderia RepID=B2JL34_BURP8 Length = 164 Score = 43.2 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 30/176 (17%), Positives = 48/176 (27%), Gaps = 44/176 (25%) Query: 69 QLRMFVPGKPAPQGSKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAM 128 ++ + G+PA + + + GT + S + DA+ Sbjct: 2 RVAFTLRGEPASKANSR-EIVARKVRSKTDGTLKTRPMSIKSDKARNFE-------RDAL 53 Query: 129 LS-AGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTD---- 183 + PVR L A +RPDLD +LD + D Sbjct: 54 KQIPPSARVRMTGPVRVILKIFY-------------ATERPDLD--ESVILDVMQDRFRT 98 Query: 184 --------------VVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGDEAIA 225 V+ +D QV P + I S A+A Sbjct: 99 VTVKGIERRELVYHGVYRNDRQVRQKFV--FHGIDRVNPRAEVVIESLQEQQLALA 152 >UniRef50_A9B184 Endodeoxyribonuclease RusA n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B184_HERA2 Length = 138 Score = 43.2 bits (100), Expect = 0.006, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 21/127 (16%) Query: 102 GPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYT 161 + +E+ A + ++AL +S L + + L F P Sbjct: 23 RRVLSREAQAFKRQVKRQLALLQQRDTISEQFLALAHQGYIALFLDFYFETPLRR----- 77 Query: 162 PPAVKRPDLDKLARAVLDGLTDVVWLDDSQVDDLHARKVLAELSQQPGCHMRIASPGWGD 221 DLD + D + + ++D++V D+H K + P + + Sbjct: 78 -------DLDGGLKITQDSICTSLGINDNRVVDIHLVKRID--PLHPRLEVELE------ 122 Query: 222 EAIAAWQ 228 A++ WQ Sbjct: 123 -ALSDWQ 128 >UniRef50_UPI0001693C21 hypothetical protein Plarl_09275 n=2 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693C21 Length = 124 Score = 42.8 bits (99), Expect = 0.011, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 25/121 (20%) Query: 101 RGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSY 160 +G ++ S W E + ++D G V L F P Sbjct: 22 KGKRAVRVLSQEAREWYEETVILASDWRKKNG--WQTAGGKVIVRLWFYFPDRRRR---- 75 Query: 161 TPPAVKRPDLDKLARAVLDGLTDVVWLDDS-----QVDDLHARKVLAELSQQPGCHMRIA 215 D + +LD L D + DD QV D ++P + + Sbjct: 76 --------DTHNGLKILLDALEDARFYDDDKHALPQVMD------YGIDRERPRVEIELE 121 Query: 216 S 216 Sbjct: 122 R 122 >UniRef50_A5EUW4 Endodeoxyribonuclease RusA family n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EUW4_DICNV Length = 125 Score = 42.4 bits (98), Expect = 0.014, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 14/115 (12%) Query: 84 KDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVR 143 F P R S +R + L + + + DK+ + Sbjct: 4 HTFKALLPMPPSVNHYYRRRGSHVYLSDEARIFRRDVVLKTIGKIPNKKR-WFDKEQRLA 62 Query: 144 ASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHA 197 ++T D+D +A+LD L ++ V+ +D+Q+DDL Sbjct: 63 MTVTLYPTNRRSF------------DIDNRLKALLDVLQEIGVYHNDNQIDDLRV 105 >UniRef50_B2U015 Crossover junction endodeoxyribonuclease RusA n=129 Tax=Enterobacteriaceae RepID=B2U015_SHIB3 Length = 126 Score = 42.1 bits (97), Expect = 0.016, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 37/130 (28%), Gaps = 18/130 (13%) Query: 85 DFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRA 144 P R S A +R +AL L + Sbjct: 4 RIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQ-----QRLKLSLSGRLAI 58 Query: 145 SLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAE 203 + P K DLD + +A LD LT + +DD Q D+++ + Sbjct: 59 KIIAEPPD-----KRRR-------DLDNILKAPLDALTHAGLLMDDEQFDEINIVRAQPV 106 Query: 204 LSQQPGCHMR 213 + G + Sbjct: 107 SGGRLGVKIY 116 >UniRef50_B7A959 Endodeoxyribonuclease RusA n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A959_THEAQ Length = 118 Score = 41.7 bits (96), Expect = 0.019, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 162 PPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVLAELSQQPGCHM 212 PP ++ DLD + +A+LD L V DD QV L+ + E + + Sbjct: 61 PPDRRKRDLDNITKALLDALVGAGVLKDDHQVAVLYVERRPFERPGKVRLVV 112 >UniRef50_Q9MCN8 Crossover junction endodeoxyribonuclease rusA n=19 Tax=root RepID=RUSA_BPHK7 Length = 120 Score = 40.5 bits (93), Expect = 0.047, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 35/123 (28%), Gaps = 18/123 (14%) Query: 92 APEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPVRASLTFVMP 151 P R S +R+ + LD R + + Sbjct: 10 YPPSLNTYWRRRGSQYYISDKGQKYRKDVQQIIRQ-------LKLDIFTKSRLRIKVIAD 62 Query: 152 RPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDVVW-LDDSQVDDLHARKVLAELSQQPGC 210 P + DLD + + +LD L + DD Q DD+ + + + G Sbjct: 63 VPDSRRR----------DLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGI 112 Query: 211 HMR 213 + Sbjct: 113 KIT 115 >UniRef50_A3VSR8 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSR8_9PROT Length = 91 Score = 40.5 bits (93), Expect = 0.047, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 10/72 (13%) Query: 119 RIALASADAMLSAGLPVLDKKYPVRASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVL 178 + + M V P A + + D+D +A+AVL Sbjct: 30 ALKKIVSAHMRRQVAFVRPAFGPFEARIW------TSVLAETRGHH----DVDNIAKAVL 79 Query: 179 DGLTDVVWLDDS 190 D L+ +W DD Sbjct: 80 DSLSGHIWRDDR 91 >UniRef50_C1XZ34 Holliday junction resolvase n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XZ34_9DEIN Length = 120 Score = 40.1 bits (92), Expect = 0.066, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 31/134 (23%), Gaps = 24/134 (17%) Query: 83 SKDFMGFKKAPEGSPPGTRGPAILKESSAAVGPWRERIALASADAMLSAGLPVLDKKYPV 142 + P V WR+ +A S + PV Sbjct: 5 RPACLCLPWPPASGNHQYGRRTRGVYLRREVTAWRDEVAWLSRGH---------KAEVPV 55 Query: 143 RASLTFVMPRPSGTPKSYTPPAVKRPDLDKLARAVLDGLTDV-VWLDDSQVDDLHARKVL 201 + P D D + + +LD L V DD R Sbjct: 56 ELRIRLYPPDNRRR------------DADNVLKLLLDALVRAGVIPDDCNRVVRAYRMEW 103 Query: 202 AELSQQPGCHMRIA 215 +PG + + Sbjct: 104 G--QARPGGAIEVE 115 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.126 0.350 Lambda K H 0.267 0.0386 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,206,257,123 Number of Sequences: 3077464 Number of extensions: 45131780 Number of successful extensions: 228750 Number of sequences better than 1.0e-01: 116 Number of HSP's better than 0.1 without gapping: 162 Number of HSP's successfully gapped in prelim test: 78 Number of HSP's that attempted gapping in prelim test: 228314 Number of HSP's gapped (non-prelim): 268 length of query: 237 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 112 effective length of database: 655,713,356 effective search space: 73439895872 effective search space used: 73439895872 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 91 (39.7 bits)