Emailhurlbertj@winthrop.edu
DescriptionASR85459.1_DNA_polymerase_II_exonuclease_[Mycobacterium_phage_Cain]
DateMon Jun 7 16:50:03 BST 2021
Unique Job ID5713d4710b81a494

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1d2qxfa1



100.0 16 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
2c4rg8A_



100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease i;
PDBTitle: structural and biochemical studies of a moderately thermophilic2 exonuclease i from methylocaldum szegediense
3c5fkvD_



100.0 20 PDB header:transferase
Chain: D: PDB Molecule:dna polymerase iii epsilon;
PDBTitle: cryo-em structure of the e. coli replicative dna polymerase complex2 bound to dna (dna polymerase iii alpha, beta, epsilon, tau complex)
4c2p1jB_



100.0 23 PDB header:transferase
Chain: B: PDB Molecule:dna polymerase iii polc-type;
PDBTitle: crystal structure of a polc-type dna polymerase iii exonuclease domain2 from thermotoga maritima
5d2guia1



100.0 19 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
6d2f96a1



100.0 21 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
7c3u6fA_



100.0 20 PDB header:hydrolase/dna
Chain: A: PDB Molecule:three prime repair exonuclease 1;
PDBTitle: mouse trex1 d200n mutant
8c3cm6A_



100.0 11 PDB header:hydrolase, apoptosis
Chain: A: PDB Molecule:cell death-related nuclease 4;
PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
9d1y97a1



100.0 20 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
10c1zbuB_



100.0 13 PDB header:hydrolase
Chain: B: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: crystal structure of full-length 3'-exonuclease
11d3b6oa1



100.0 19 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
12d1w0ha_



100.0 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
13c1zbhA_



100.0 13 PDB header:hydrolase/rna
Chain: A: PDB Molecule:3'-5' exonuclease eri1;
PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
14c2xriA_



100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:eri1 exoribonuclease 3;
PDBTitle: crystal structure of human eri1 exoribonuclease 3
15c6n6jB_



100.0 18 PDB header:rna binding protein/rna
Chain: B: PDB Molecule:rna exonuclease 2 homolog,small fragment nuclease;
PDBTitle: human rexo2 bound to paa
16c6rk6B_



100.0 17 PDB header:hydrolase
Chain: B: PDB Molecule:oligoribonuclease;
PDBTitle: characterization of an intertidal zone metagenome oligoribonuclease2 and the role of the intermolecular disulfide bond for homodimer3 formation and nuclease activity.
17d1j9aa_



100.0 20 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
18c3tr8A_



100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii
19c6n6dA_



100.0 16 PDB header:rna binding protein/rna
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: vibrio cholerae oligoribonuclease bound to pag
20c6a4dA_



100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: pnp-tmp bound oligoribonuclease (orn) from colwellia psychrerythraea2 strain 34h
21c5cy4C_



not modelled 100.0 19 PDB header:oxidoreductase
Chain: C: PDB Molecule:oligoribonuclease;
PDBTitle: crystal structure of an oligoribonuclease from acinetobacter baumannii
22c2gbzA_



not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:oligoribonuclease;
PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
23c5z9xA_



not modelled 100.0 16 PDB header:plant protein/rna
Chain: A: PDB Molecule:small rna degrading nuclease 1;
PDBTitle: arabidopsis small rna degrading nuclease 1 in complex with an rna2 substrate
24d2igia1



not modelled 100.0 17 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
25d1wlja_



not modelled 99.9 20 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
26c4fzxC_



not modelled 99.9 19 PDB header:hydrolase/dna
Chain: C: PDB Molecule:exodeoxyribonuclease 10;
PDBTitle: exonuclease x in complex with 3' overhanging duplex dna
27c5l80B_



not modelled 99.9 12 PDB header:rna binding protein
Chain: B: PDB Molecule:maternal protein exuperantia,maternal protein exuperantia;
PDBTitle: structure of exuperantia exo-like and sam-like domains
28c4wbqA_



not modelled 99.9 20 PDB header:rna binding protein
Chain: A: PDB Molecule:qde-2-interacting protein;
PDBTitle: crystal structure of the exonuclease domain of qip (qde-2 interacting2 protein) solved by native-sad phasing.
29c2is3B_



not modelled 99.9 19 PDB header:hydrolase
Chain: B: PDB Molecule:ribonuclease t;
PDBTitle: crystal structure of escherichia coli rnase t
30d1uoca_



not modelled 99.8 16 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
31d2d5ra1



not modelled 99.7 19 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:CAF1-like ribonuclease
32c2p51A_



not modelled 99.6 16 PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:spcc18.06c protein;
PDBTitle: crystal structure of the s. pombe pop2p deadenylation subunit
33c4czwA_



not modelled 99.6 14 PDB header:gene regulation
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the neurospora crassa pan2 catalytic unit (protease and2 nuclease domain)
34c4gmjB_



not modelled 99.6 19 PDB header:rna binding protein
Chain: B: PDB Molecule:ccr4-not transcription complex subunit 7;
PDBTitle: structure of human not1 mif4g domain co-crystallized with caf1
35c4hecB_



not modelled 99.5 18 PDB header:unknown function
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative uncharacterized protein from2 mycobacterium tuberculosis
36c4q8jA_



not modelled 99.4 14 PDB header:hydrolase
Chain: A: PDB Molecule:pab-dependent poly(a)-specific ribonuclease subunit pan2;
PDBTitle: structure of the saccharomyces cerevisiae pan2-pan3 core complex
37c3d45B_



not modelled 99.4 17 PDB header:hydrolase
Chain: B: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of mouse parn in complex with m7gpppg
38c2a1sC_



not modelled 99.2 19 PDB header:hydrolase
Chain: C: PDB Molecule:poly(a)-specific ribonuclease parn;
PDBTitle: crystal structure of native parn nuclease domain
39d1kfsa1



not modelled 99.2 20 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
40d1x9ma1



not modelled 99.1 20 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
41c2kzzA_



not modelled 99.0 18 PDB header:transferase/dna
Chain: A: PDB Molecule:protein (dna polymerase i);
PDBTitle: klenow fragment with normal substrate and zinc only
42c5okiA_



not modelled 98.8 19 PDB header:replication
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: crystal structure of the ctf18-1-8 module from ctf18-rfc in complex2 with a 63 kda fragment of dna polymerase epsilon
43c5dkuB_



not modelled 98.7 14 PDB header:transferase
Chain: B: PDB Molecule:prex dna polymerase;
PDBTitle: c-terminal his tagged appol exonuclease mutant
44c6s1cE_



not modelled 98.7 19 PDB header:replication
Chain: E: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: p3221 crystal form of the ctf18-1-8/pol2(1-528) complex
45c6r5kA_



not modelled 98.6 17 PDB header:rna binding protein
Chain: A: PDB Molecule:pan2-pan3 deadenylation complex catalytic subunit pan2;
PDBTitle: cryo-em structure of a poly(a) rnp bound to the pan2-pan3 deadenylase
46d1wn7a1



not modelled 98.6 14 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
47c1tk0A_



not modelled 98.6 21 PDB header:transferase/electron transport/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and ddctp at2 the insertion site
48d1qhta1



not modelled 98.6 15 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
49c4m8oA_



not modelled 98.6 18 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: ternary complex of dna polymerase epsilon with an incoming datp
50d1tgoa1



not modelled 98.6 16 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
51c6wjvA_



not modelled 98.6 21 PDB header:cell cycle
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: structure of the saccharomyces cerevisiae polymerase epsilon2 holoenzyme
52c1njzA_



not modelled 98.5 14 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: cytosine-thymine mismatch at the polymerase active site
53c2gv9A_



not modelled 98.5 14 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
54d1d5aa1



not modelled 98.5 14 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
55c6fwkB_



not modelled 98.5 21 PDB header:dna binding protein
Chain: B: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: the crystal structure of pol2core-m644g in complex with dna and an2 incoming nucleotide
56c5mdnB_



not modelled 98.4 19 PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: structure of the family b dna polymerase from the hyperthermophilic2 archaeon pyrobaculum calidifontis
57c3iayA_



not modelled 98.4 13 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase delta catalytic subunit;
PDBTitle: ternary complex of dna polymerase delta
58c2gv9B_



not modelled 98.4 13 PDB header:transferase
Chain: B: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
59c4x0pB_



not modelled 98.4 14 PDB header:transferase/dna
Chain: B: PDB Molecule:dna polymerase theta;
PDBTitle: ternary complex of human dna polymerase theta c-terminal domain2 binding ddatp opposite a tetrahydrofuran ap site analog
60c5zo4B_



not modelled 98.4 24 PDB header:hydrolase
Chain: B: PDB Molecule:putative 3'-5' exonuclease family protein;
PDBTitle: inactive state of the nuclease
61c6s2fA_



not modelled 98.3 17 PDB header:replication
Chain: A: PDB Molecule:dna polymerase epsilon catalytic subunit a;
PDBTitle: cryo-em structure of ctf18-1-8 in complex with the catalytic domain of2 dna polymerase epsilon (class 2)
62d2hhva1



not modelled 98.3 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
63d1ih7a1



not modelled 98.2 12 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
64c2vwkA_



not modelled 98.1 15 PDB header:dna replication
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
65c6vddD_



not modelled 98.1 18 PDB header:transferase/dna
Chain: D: PDB Molecule:dna polymerase i;
PDBTitle: pol domain of pol1 from m. smegmatis complex with dna primer-template2 and dntp
66c6p1hA_



not modelled 98.1 13 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna polymerase delta catalytic subunit;
PDBTitle: cryo-em structure of dna polymerase delta holoenzyme
67c6tnyA_



not modelled 98.1 17 PDB header:replication
Chain: A: PDB Molecule:dna polymerase delta catalytic subunit;
PDBTitle: processive human polymerase delta holoenzyme
68d1s5ja1



not modelled 98.0 16 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
69d1q8ia1



not modelled 97.9 18 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
70c1d5aA_



not modelled 97.9 15 PDB header:transferase
Chain: A: PDB Molecule:protein (dna polymerase);
PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
71c7jw2B_



not modelled 97.9 14 PDB header:rna binding protein
Chain: B: PDB Molecule:exonuclease mut-7 homolog;
PDBTitle: crystal structure of aedes aegypti nibbler exo domain
72c5c0xK_



not modelled 97.8 17 PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to structured2 rna
73c5exrG_



not modelled 97.8 13 PDB header:replication
Chain: G: PDB Molecule:dna polymerase alpha catalytic subunit;
PDBTitle: crystal structure of human primosome
74c5n2hA_



not modelled 97.8 11 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: structure of the e9 dna polymerase exonuclease deficient mutant2 (d166a+e168a) from vaccinia virus
75d1noya_



not modelled 97.7 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
76c7jw6A_



not modelled 97.7 11 PDB header:rna binding protein
Chain: A: PDB Molecule:exonuclease mut-7 homolog;
PDBTitle: crystal structure of drosophila nibbler exo domain
77d1yt3a3



not modelled 97.7 13 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
78c2dtuA_



not modelled 97.7 13 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase;
PDBTitle: crystal structure of the beta hairpin loop deletion variant of rb692 gp43 in complex with dna containing an abasic site analog
79c1q8iA_



not modelled 97.6 18 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase ii;
PDBTitle: crystal structure of escherichia coli dna polymerase ii
80c1s5jA_



not modelled 97.6 18 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
81c1yt3A_



not modelled 97.6 14 PDB header:hydrolase,translation
Chain: A: PDB Molecule:ribonuclease d;
PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
82c2e6mA_



not modelled 97.5 16 PDB header:hydrolase
Chain: A: PDB Molecule:werner syndrome atp-dependent helicase homolog;
PDBTitle: structure of mouse werner exonuclease domain
83c6k1dB_



not modelled 97.4 17 PDB header:hydrolase
Chain: B: PDB Molecule:exonuclease 3'-5' domain-containing protein 2;
PDBTitle: crystal structure of exd2 exonuclease domain soaked in mn and gmp
84c4ktqA_



not modelled 97.3 21 PDB header:transferase/dna
Chain: A: PDB Molecule:protein (large fragment of dna polymerase i);
PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
85c4oo1J_



not modelled 97.2 18 PDB header:hydrolase/rna
Chain: J: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of an rrp6-rna exosome complex bound to poly(a) rna
86c4xviA_



not modelled 97.0 14 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase nu;
PDBTitle: binary complex of human polymerase nu and dna with the finger domain2 ajar
87c4q5vA_



not modelled 97.0 8 PDB header:transferase/dna/rna
Chain: A: PDB Molecule:dna polymerase alpha catalytic subunit;
PDBTitle: crystal structure of the catalytic core of human dna polymerase alpha2 in ternary complex with an rna-primed dna template and aphidicolin
88c4fydA_



not modelled 96.9 10 PDB header:transferase/dna
Chain: A: PDB Molecule:dna polymerase alpha catalytic subunit a;
PDBTitle: crystal structure of yeast dna polymerase alpha bound to dna/rna and2 dgtp
89c6vdeA_



not modelled 96.9 20 PDB header:transferase
Chain: A: PDB Molecule:dna polymerase i;
PDBTitle: full-length m. smegmatis pol1
90c6v8pA_



not modelled 96.6 7 PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of dna polymerase zeta (apo)
91d2hbka2



not modelled 96.5 19 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
92d1vk0a_



not modelled 96.5 14 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
93c6v93A_



not modelled 95.8 8 PDB header:dna binding protein
Chain: A: PDB Molecule:dna polymerase zeta catalytic subunit;
PDBTitle: structure of dna polymerase zeta/dna/dntp ternary complex
94c2hbkA_



not modelled 95.4 17 PDB header:hydrolase, gene regulation
Chain: A: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of the yeast nuclear exosome component, rrp6p, reveals an2 interplay between the active site and the hrdc domain; protein in3 complex with mn
95c3cymA_



not modelled 94.1 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein bad_0989;
PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
96c5v5fA_



not modelled 93.7 16 PDB header:transferase
Chain: A: PDB Molecule:at3g11770;
PDBTitle: crystal structure of rice1 (pnt2)
97c4nlbA_



not modelled 92.8 15 PDB header:hydrolase
Chain: A: PDB Molecule:ribosomal rna processing protein 6;
PDBTitle: crystal structure of the catalytic core of rrp6 from trypanosoma2 brucei
98c3ikmD_



not modelled 91.5 18 PDB header:transferase
Chain: D: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: crystal structure of human mitochondrial dna polymerase holoenzyme
99c5fiqE_



not modelled 90.5 10 PDB header:hydrolase
Chain: E: PDB Molecule:exd1;
PDBTitle: exonuclease domain-containing 1 (exd1) in the native conformation
100c5c0wK_



not modelled 90.1 19 PDB header:hydrolase/rna
Chain: K: PDB Molecule:exosome complex exonuclease rrp6;
PDBTitle: structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates
101c4ybgA_



not modelled 90.0 12 PDB header:hydrolase
Chain: A: PDB Molecule:protein maelstrom;
PDBTitle: crystal structure of the mael domain of drosophila melanogaster2 maelstrom
102d2py5a1



not modelled 87.8 12 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:DnaQ-like 3'-5' exonuclease
103c4ztuA_



not modelled 87.6 16 PDB header:dna binding protein/dna
Chain: A: PDB Molecule:dna polymerase subunit gamma-1;
PDBTitle: structural basis for processivity and antiviral drug toxicity in human2 mitochondrial dna replicase
104c3sahA_



not modelled 82.3 16 PDB header:hydrolase
Chain: A: PDB Molecule:exosome component 10;
PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site
105c4o6hA_



not modelled 78.4 11 PDB header:hydrolase
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: 2.8a crystal structure of lymphocytic choriomeningitis virus2 nucleoprotein c-terminal domain
106c7c4cA_



not modelled 74.4 16 PDB header:rna binding protein
Chain: A: PDB Molecule:cchc-type domain-containing protein;
PDBTitle: the crystal structure of trypanosoma brucei rnase d : gmp complex
107c3q7cA_



not modelled 67.5 15 PDB header:hydrolase
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: exonuclease domain of lassa virus nucleoprotein bound to manganese
108c2ex3I_



not modelled 47.9 11 PDB header:transferase/replication
Chain: I: PDB Molecule:dna polymerase;
PDBTitle: bacteriophage phi29 dna polymerase bound to terminal protein
109c4gveA_



not modelled 38.5 15 PDB header:viral protein
Chain: A: PDB Molecule:nucleoprotein;
PDBTitle: tacaribe nucleoprotein structure